GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001086-TA|BGIBMGA001086-PA|undefined
         (64 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528...    27   1.9  
03_03_0086 + 14345649-14347190                                         26   3.3  
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240...    25   5.8  
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543...    25   5.8  

>02_05_0540 +
           29852109-29852195,29852304-29852477,29852585-29852841,
           29852954-29853125,29853513-29853551,29853647-29853715,
           29853795-29853911,29854190-29854401,29854578-29854736,
           29854810-29855009,29855100-29855266,29855346-29855442,
           29855560-29855651,29855861-29856139
          Length = 706

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 19  QLLEEINFQRTKEMRQLMKDEKDIVVYNSLLVWKKVL 55
           QLL ++N ++T ++ +L  D KDI    SL   K +L
Sbjct: 245 QLLADLNLKKTPQLVELFDDSKDIDEVLSLSPEKMLL 281


>03_03_0086 + 14345649-14347190
          Length = 513

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 9   TFLKNATMLEQLLEEINFQRTKEMRQLMKDEKDIVVYNSLL 49
           T + +  ++   + E  ++  +E+   M DEKD+VVYN+++
Sbjct: 192 TVVSSTALIVGCMNEGLYEDAEEIFNTM-DEKDVVVYNAMV 231


>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
            21824135-21824224,21825033-21825603,21826097-21826734,
            21826978-21827098,21827223-21827337,21828234-21829723,
            21829830-21829901,21830151-21830196,21830413-21830515,
            21830591-21830674,21831035-21831475,21831651-21831746,
            21831896-21832045,21832131-21832274,21832414-21832527,
            21832621-21832803,21832901-21832945,21833058-21833192
          Length = 1764

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 22   EEIN-FQRTKEMRQLMKDEKDIVVYNSLLVWKKVLFNQSSV 61
            E+IN + R    +  M+ +K+ V Y  L  WK ++  +SS+
Sbjct: 1588 EQINAWIRINGSKSCMRGQKEYVHYKQLKGWKHLVVYKSSI 1628


>04_03_0535 - 16850704-16853001,16854055-16854115,16854228-16854323,
            16854394-16854521,16855016-16855067,16855182-16855274,
            16855473-16855590,16856456-16856609,16857512-16857643,
            16859136-16859216,16859353-16859507,16860118-16860343,
            16860423-16860507,16860593-16860689,16861785-16861949,
            16862046-16862121,16863041-16863103,16863193-16863359,
            16863495-16863669,16863743-16863835,16864694-16864810,
            16865589-16865778,16866092-16866126
          Length = 1618

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/35 (25%), Positives = 23/35 (65%)

Query: 15   TMLEQLLEEINFQRTKEMRQLMKDEKDIVVYNSLL 49
            +M+  LL+    +  +++ + +KDE++ V +NS++
Sbjct: 1250 SMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMI 1284


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.136    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,930
Number of Sequences: 37544
Number of extensions: 39349
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 4
length of query: 64
length of database: 14,793,348
effective HSP length: 44
effective length of query: 20
effective length of database: 13,141,412
effective search space: 262828240
effective search space used: 262828240
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)