GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001086-TA|BGIBMGA001086-PA|undefined
         (64 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38347| Best HMM Match : TFIIB (HMM E-Value=0.0018)                  28   0.93 
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     27   2.2  
SB_10530| Best HMM Match : UBA (HMM E-Value=0.0016)                    26   5.0  
SB_29310| Best HMM Match : RGS (HMM E-Value=0.86)                      25   8.7  
SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.7  

>SB_38347| Best HMM Match : TFIIB (HMM E-Value=0.0018)
          Length = 631

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 9   TFLKNATMLEQLLEEINFQRT 29
           TFLKN T+++ LL E+NF  T
Sbjct: 81  TFLKNDTLVKNLLGELNFALT 101


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 11  LKNATMLEQLLEEINFQRTKEMRQLMKD-EKD 41
           LKNA  LEQ   E+ F+  KEM    ++ +KD
Sbjct: 598 LKNAQSLEQQRAELQFEHEKEMEVFREESQKD 629


>SB_10530| Best HMM Match : UBA (HMM E-Value=0.0016)
          Length = 74

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 17 LEQLLEEINFQRTKEMRQLMKDEKDIVVYNSLLV 50
          +E ++++ N  R K +  L K+E DIV  N+++V
Sbjct: 11 IELVMQQANVSRNKAIMALKKNENDIV--NAIMV 42


>SB_29310| Best HMM Match : RGS (HMM E-Value=0.86)
          Length = 1013

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 11  LKNATMLEQLLEEINFQRTKEMRQLMKD 38
           L N +++E+LLE++N   T+ + Q   D
Sbjct: 313 LANVSVIERLLEDVNVHPTRNIYQEFLD 340


>SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1585

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 11  LKNATMLEQLLEEINFQRTKEMRQLMKD 38
           L N +++E+LLE++N   T+ + Q   D
Sbjct: 492 LANVSVIERLLEDVNVHPTRNIYQEFLD 519


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.136    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,246
Number of Sequences: 59808
Number of extensions: 43105
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 5
length of query: 64
length of database: 16,821,457
effective HSP length: 43
effective length of query: 21
effective length of database: 14,249,713
effective search space: 299243973
effective search space used: 299243973
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)