GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001086-TA|BGIBMGA001086-PA|undefined
         (64 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s...    27   2.1  
At3g18840.1 68416.m02392 pentatricopeptide (PPR) repeat-containi...    26   2.7  
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ...    25   4.7  
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi...    25   4.7  
At3g19230.1 68416.m02440 leucine-rich repeat family protein cont...    25   4.7  
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin...    25   8.3  
At4g18600.1 68417.m02755 expressed protein                             25   8.3  
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin...    25   8.3  
At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containi...    25   8.3  
At1g66840.1 68414.m07597 expressed protein contains Pfam profile...    25   8.3  

>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
           similarity to fimbrin-like protein AtFim2 [Arabidopsis
           thaliana] GI:2737926; contains Pfam profile PF00307:
           Calponin homology (CH) domain
          Length = 654

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 19  QLLEEINFQRTKEMRQLMKDEKDIVVYNSL 48
           QLL ++N ++T ++ +L+ D KD+    SL
Sbjct: 240 QLLADLNLKKTPQLVELVGDSKDVEELMSL 269


>At3g18840.1 68416.m02392 pentatricopeptide (PPR)
          repeat-containing protein contains Pfam profile
          PF01535: PPR repeat
          Length = 698

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 24 INFQRTKEMRQLMKD---EKDIVVYNSLL 49
          + F   KE R+L +    E+D++ YN+LL
Sbjct: 65 VKFNNVKEARELFESDNCERDLITYNTLL 93


>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893, fimbrin [Schizosaccharomyces pombe]
           GI:3057144; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 687

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 19  QLLEEINFQRTKEMRQLMKDEKD 41
           Q+L ++NF++T  + QL+ D +D
Sbjct: 238 QMLADLNFKKTPSLFQLVDDTQD 260


>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 612

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 1   MALGLGGCTFLKNATMLEQLLEEINFQRTKEMRQLMKDEKDIVVYNSLLV 50
           +ALG   C F+ NA +++   +  +    K++   M+  +D+V + SL+V
Sbjct: 265 IALGFDSCVFISNA-LIDMYAKCSDVIAAKDIFSRMR-HRDVVSWTSLIV 312


>At3g19230.1 68416.m02440 leucine-rich repeat family protein
           contains Pfam profile:PF00560 LRR:Leucine Rich Repeat
           domains; similar to light repressible receptor protein
           kinase (GI:1321686)[Arabidopsis thaliana]
          Length = 519

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 3   LGLGGCTFLKNATMLEQLLEEI 24
           L LGG T +K+A  +E LLE I
Sbjct: 348 LPLGGTTNIKDAIAMEDLLESI 369


>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
           (TUBG2) identical to  SP|P38558 Tubulin gamma-2 chain
           (Gamma-2 tubulin) {Arabidopsis thaliana}
          Length = 474

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 8/52 (15%)

Query: 20  LLEEINFQRTKEMRQLMK------DEKDIVV--YNSLLVWKKVLFNQSSVIL 63
           LLE +N + +K++ Q         +  D+VV  YNSLL  K++  N   V++
Sbjct: 153 LLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVV 204


>At4g18600.1 68417.m02755 expressed protein
          Length = 1907

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 8   CTFLKNATMLEQLLEEINFQRTKEMRQLMKDE 39
           C +L N   +E++L E  F+    + +L KD+
Sbjct: 964 CIYLTNVVPIEEVLPEEPFEACASLGKLPKDK 995


>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
           (TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
           (Gamma-1 tubulin) {Arabidopsis thaliana}
          Length = 474

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 8/52 (15%)

Query: 20  LLEEINFQRTKEMRQLMK------DEKDIVV--YNSLLVWKKVLFNQSSVIL 63
           LLE +N + +K++ Q         +  D+VV  YNSLL  K++  N   V++
Sbjct: 153 LLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVV 204


>At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 510

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 16  MLEQLLEEINFQRTKEMRQLMKD---EKDIVVYNSLL 49
           +LE   +E+N  R  E+ + MKD   E D+V Y  ++
Sbjct: 238 LLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIII 274


>At1g66840.1 68414.m07597 expressed protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827);
           expression supported by MPSS
          Length = 607

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 15  TMLEQLLEEINFQRTKEMRQLMKDE 39
           TMLE+  E    QR+  +++L++DE
Sbjct: 505 TMLEEERESFRMQRSLSIKRLVQDE 529


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.136    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,336,535
Number of Sequences: 28952
Number of extensions: 37362
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 10
length of query: 64
length of database: 12,070,560
effective HSP length: 44
effective length of query: 20
effective length of database: 10,796,672
effective search space: 215933440
effective search space used: 215933440
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)