Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001085-TA|BGIBMGA001085-PA|IPR004729|Transient receptor
potential channel, IPR002110|Ankyrin, IPR013555|Transient receptor ion
channel II, IPR005821|Ion transport, IPR001086|Prephenate dehydratase
         (1024 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.      25   2.6  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    25   2.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    25   2.6  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    25   2.6  

>Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.
          Length = 72

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 792 NEIKQDVSAFRCELVEILRNSGMNTSTANA 821
           N+  Q+V  F  E ++ + +SG++ ST N+
Sbjct: 39  NQTAQNVDTFVREQIDFVGSSGVDVSTVNS 68


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 421 LLILASQRIETAPGGLLWDVSHDEPLSRRGSMPSIVEWLILAWVSGLIWSEVKQLWDMGL 480
           +L+  +  ++ +  GL  DV  D    + G     V W+ L  ++   ++    +W  G+
Sbjct: 623 VLVCENHTVKVSDFGLSRDVYQDNVYCKNGGGKLPVRWMALESLTHQRYTTYSDVWSFGV 682


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 8/25 (32%), Positives = 10/25 (40%)

Query: 855 GGSLAPVDEFMSPVSWLQHDHGVPH 879
           G  + P  +   P  W  H H  PH
Sbjct: 35  GAQMGPEQQMWEPQMWHHHSHMPPH 59


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 8/25 (32%), Positives = 10/25 (40%)

Query: 855 GGSLAPVDEFMSPVSWLQHDHGVPH 879
           G  + P  +   P  W  H H  PH
Sbjct: 35  GAQMGPEQQMWEPQMWHHHSHMPPH 59


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.136    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,195
Number of Sequences: 317
Number of extensions: 8696
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 6
length of query: 1024
length of database: 114,650
effective HSP length: 64
effective length of query: 960
effective length of database: 94,362
effective search space: 90587520
effective search space used: 90587520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)