Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001085-TA|BGIBMGA001085-PA|IPR004729|Transient receptor
potential channel, IPR002110|Ankyrin, IPR013555|Transient receptor ion
channel II, IPR005821|Ion transport, IPR001086|Prephenate dehydratase
         (1024 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   1.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   3.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   9.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 29  ASEPRPLDSKVKRHSIHGMTEEENVVRPHQEMAVLSLEEKKYLLGVERGDVAGTRRVLQR 88
           A+ P P   +V    + G  EE+ V +   +  +LSLE+      +E       R +LQR
Sbjct: 686 ATTPPPQVDEVDDKELSGAEEEKEVEKALLK-PLLSLEDLVRFSTLEGSGGDSLRTLLQR 744

Query: 89  ARDTG 93
            ++TG
Sbjct: 745 GQETG 749


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 790 DVNEIKQDVSAFRCELVEILRNSGMNTSTANAGAPEVMMLRAGGGGGKKNRQKERRLMKG 849
           +VN  ++ +S+F  +  E+LR SG+          E+  +RA   GG  +     +L++ 
Sbjct: 92  EVNVHQRSLSSF-LKTAEVLRVSGLTQQADQTDRDELSHVRALAAGG-NHLPFHEKLVES 149

Query: 850 FNIAPGGSL 858
           F    GGSL
Sbjct: 150 F--PRGGSL 156


>AF388659-3|AAK71993.1|  548|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform C
          protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 13 DGRRPSTCRVDMGALLASEPRPLDSKVKRHSIHGMTEE 50
          D R PS+ R    +LL S+P    +K K  + H   ++
Sbjct: 34 DRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQD 71


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 268,561
Number of Sequences: 429
Number of extensions: 10742
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 3
length of query: 1024
length of database: 140,377
effective HSP length: 65
effective length of query: 959
effective length of database: 112,492
effective search space: 107879828
effective search space used: 107879828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)