GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001085-TA|BGIBMGA001085-PA|IPR004729|Transient receptor
potential channel, IPR002110|Ankyrin, IPR013555|Transient receptor ion
channel II, IPR005821|Ion transport, IPR001086|Prephenate dehydratase
         (1024 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    29   2.5  
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    28   5.8  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    28   5.8  

>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 11/126 (8%)

Query: 287 FATALLDHTRTSNELQI--LLNHEKGASPQAPLTEPGAPERMRLSRLKLAIKLRQKKFVA 344
           F   + D +R   E Q   +LN E   +PQA L   G P      R  L I+L +     
Sbjct: 256 FYQRISDCSRKFLEAQFFEVLNKEIAKTPQAALVG-GVPSIRNKIRAYLNIRLLRNGVWI 314

Query: 345 HPNVQ-----QLLASIWYESVPGFRRKNMLLQAAE---MVRIGAMFPLYSLAYIAAPHSA 396
           +P+++      + A I+Y    GF ++ +           ++   FP Y  AY  AP+  
Sbjct: 315 NPDLEIIQDVPIWAFIFYLLRCGFLKEAVDFTEENRDLFEKVAEKFPFYINAYAKAPNGI 374

Query: 397 VGRTLR 402
           + R LR
Sbjct: 375 LPRQLR 380


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 490 VIDFVTNSLYVATVALRIVSHYQVRREMAMGLQWNQ 525
           VID VT  + +++V  RI++H Q+    +   +WNQ
Sbjct: 328 VIDEVTQIVTISSVQSRILNHSQIASMESRLREWNQ 363


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 771 RRYVTVQ---QRRAESGGVTEDDVNEIKQDVSAFRCELVEILRNSGMN 815
           +R+VT +   Q   ++  +TE+   E+K+D S+   E +++L  +G+N
Sbjct: 25  KRFVTEKSQSQEEKDTSKITENAKEEVKRDTSSLAKESLKLLDLNGLN 72


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.136    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,205,850
Number of Sequences: 5004
Number of extensions: 164837
Number of successful extensions: 369
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 4
length of query: 1024
length of database: 2,362,478
effective HSP length: 80
effective length of query: 944
effective length of database: 1,962,158
effective search space: 1852277152
effective search space used: 1852277152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)