Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001085-TA|BGIBMGA001085-PA|IPR004729|Transient receptor
potential channel, IPR002110|Ankyrin, IPR013555|Transient receptor ion
channel II, IPR005821|Ion transport, IPR001086|Prephenate dehydratase
(1024 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680 33 1.5
10_02_0024 - 4314090-4314269,4314387-4314458,4315093-4315227,431... 33 1.5
09_03_0089 + 12265916-12267232 32 2.0
02_03_0314 - 17600970-17600974,17601230-17601357,17601832-176019... 32 2.0
01_01_1167 - 9301114-9301490,9302251-9302808,9303054-9303093 31 3.6
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 31 4.7
03_02_0574 + 9575496-9575517,9575636-9576418,9576754-9577163,957... 31 4.7
06_01_0614 + 4448129-4448157,4448733-4449231,4449512-4449550,444... 31 6.3
01_06_0197 + 27416724-27417119 31 6.3
05_07_0234 - 28566846-28567766 30 8.3
04_03_0830 - 20125827-20125913,20126262-20126357,20126974-201270... 30 8.3
03_05_0197 + 21884415-21885332,21886130-21886750 30 8.3
>11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680
Length = 612
Score = 32.7 bits (71), Expect = 1.5
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 816 TSTANAGAPEVMMLRAGGGGGKKNRQKERRLMKGF--NIAPGGSLA 859
T+ A GAP + AGG GG Q+ER ++KG PG LA
Sbjct: 28 TAAAAKGAPPGRISHAGGTGGGGGAQEERTILKGITGEARPGEVLA 73
>10_02_0024 -
4314090-4314269,4314387-4314458,4315093-4315227,
4315290-4315383,4315797-4315855,4315944-4315980,
4316105-4316292,4316426-4316666,4316668-4316702,
4316761-4316949,4317069-4317217,4317340-4317685
Length = 574
Score = 32.7 bits (71), Expect = 1.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 732 PSPKSLLYAWRWLQRRLCGHARAKREHMRT 761
P SL AW W ++ L HA KREH+ T
Sbjct: 354 PQYDSLSGAWEWARKTLMDHAADKREHIYT 383
>09_03_0089 + 12265916-12267232
Length = 438
Score = 32.3 bits (70), Expect = 2.0
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 811 NSGMNTSTANAGAPEVMMLRAGGGGGKKNRQKERRL----MKGFNIAPGGSLAPVDEFMS 866
NSG + +++ G E GGGGG + L GF++ GGS+ E S
Sbjct: 5 NSGGSLQSSSGGDDEFDSRGGGGGGGVDSSPLSALLRPSSSSGFSL-HGGSMYGFQELGS 63
Query: 867 PVSWLQHDHGVPHYSLSTLLGPRLRASQSSLSDGPGAGMSASRRKPQHKRR 917
+ LQH GV S S SS AG++ + ++ Q +++
Sbjct: 64 VGTSLQHQQGVQLQPWSAAQFAAGAPSSSSPRVAADAGVAGAHQQQQQQQQ 114
>02_03_0314 -
17600970-17600974,17601230-17601357,17601832-17601924,
17602145-17602257,17602520-17602627,17602724-17602828,
17603185-17603355,17603474-17603652,17603741-17603969,
17604841-17604955,17605137-17605312,17606060-17606143,
17606463-17606630,17607011-17607097,17607201-17607323
Length = 627
Score = 32.3 bits (70), Expect = 2.0
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 281 RVQCQEFATALLDHTRTSNELQILLNHEKGASPQAPLTEPGAPERMRLSRLKLA 334
R+Q + A + H R S +I H G P APLT+ A +++ KL+
Sbjct: 381 RLQAEADAHMSVKHERDSAIRKIFTKHNLGPIPDAPLTDAAAMHLTNITKAKLS 434
>01_01_1167 - 9301114-9301490,9302251-9302808,9303054-9303093
Length = 324
Score = 31.5 bits (68), Expect = 3.6
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 886 LGPRLRASQSSLSDGPGAGMSASRRKPQHKRRWGTIIDAARAARVSRLIGR 936
L RL A S GP + SA+RRKP W T++ A RL GR
Sbjct: 113 LDRRLPALNMDESRGPASWASAARRKPS-SSCWRTVVIMAATTTRRRLAGR 162
>08_02_1453 -
27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 31.1 bits (67), Expect = 4.7
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 755 KREHMRTIRAIMRNLVRRYVTVQQRRAESGGVTEDDVNEIKQDVSAFRCELVEILRNSGM 814
K EH ++L+ + Q + SG +E+ V + S F +I G
Sbjct: 518 KFEHQEQTNEF-KHLISKLYVHQDEKVASGNQSEEQVARHQHKASDFDASTTQIHLKGGA 576
Query: 815 NTSTANAGAPEVMMLRAGGGGG 836
TAN G AGGG G
Sbjct: 577 AEFTANVGNQTDTHTSAGGGLG 598
>03_02_0574 +
9575496-9575517,9575636-9576418,9576754-9577163,
9577246-9578079
Length = 682
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 177 SDITPLILAAHRDSYEIIKLLLDRGAQLPE 206
S++TPLI AA R E++ LLL+R + L E
Sbjct: 288 SNVTPLITAAIRGHIEVVNLLLERVSGLVE 317
>06_01_0614 +
4448129-4448157,4448733-4449231,4449512-4449550,
4449590-4449802,4449941-4450227,4450456-4450567,
4451515-4451751,4451857-4451957,4452285-4452384,
4452509-4453141
Length = 749
Score = 30.7 bits (66), Expect = 6.3
Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 20/202 (9%)
Query: 307 HEKGASPQAPLTEPGAPERMRLSRLKLAIKLRQKKFVAHPNVQQLLASIWYESV--PG-- 362
HE+ A P P + A + S+L L I + K F+A +WY+ + P
Sbjct: 12 HEERAKPTIPTHQKQAG--LATSKLGLGISEKNKIFLAGNE-------LWYKKIIDPSSD 62
Query: 363 -FRRKNMLLQAAEMVRIGAMFPLYSLA---YIAAPHSAVGRTLRKPFIKFLCHSASYFMF 418
N +L+ A V + M PLY Y P+S +GR R I + S + +
Sbjct: 63 FILTWNYVLRIACFVAL-FMDPLYFYVPKIYYGTPNSCIGRDTRLAIIVTVFRSITDLFY 121
Query: 419 LFLLILASQRIETAPGGLLWDVSHDEPLSRRGSMPS--IVEWLILAWVSGLIWSEVKQLW 476
+ +I+ + P L S + ++ G++ + ++ V+ L ++K+
Sbjct: 122 VLQIIIKFRTAYINPSSTLGVFSRGDLVTDPGNIAKHYLRSSFVVDLVASLPLPQLKRAS 181
Query: 477 DMGLREYVHDMWNVIDFVTNSL 498
+ ++ +W+VI V SL
Sbjct: 182 ALLYLKFEIIIWSVIPSVKYSL 203
>01_06_0197 + 27416724-27417119
Length = 131
Score = 30.7 bits (66), Expect = 6.3
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 741 WRWLQRRLCG--HARAKREHMRTIRAIMRNLVRRYVTVQQRRAESG 784
WRW Q+RL G A R H R + A+ L RR +QRR G
Sbjct: 41 WRWWQQRLVGGDSTVAGRRHWRLLAAVALGLSRR----RQRRGTRG 82
>05_07_0234 - 28566846-28567766
Length = 306
Score = 30.3 bits (65), Expect = 8.3
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 900 GPGAGMSASRRKPQHKRRWGTIIDAARAARVSRL-IGRSRSE 940
G GAG +++ P+ R+ G+ AR R+S L +GRS S+
Sbjct: 160 GAGAGSASASASPRPPRKSGSTGSMARWRRISELVVGRSHSD 201
>04_03_0830 -
20125827-20125913,20126262-20126357,20126974-20127053,
20127124-20127220,20127457-20127544,20128491-20128576,
20129358-20130530
Length = 568
Score = 30.3 bits (65), Expect = 8.3
Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 3/143 (2%)
Query: 725 PPPFNVLPSPKSLLYAWRWLQRRLCGHARAKREHMRTIRAIMRNLVRRYVTVQQRRAESG 784
PPP + S + A L H A + I A ++R +V R E+
Sbjct: 74 PPPASASSSTPTSHVAAESSSSSLPLHPSAAAAARKVIPASAAGGLKRSKSVAPRPEETT 133
Query: 785 GVTEDDVNEIKQDVSAFRCELVEILRNSGMNTSTANAGAPEVMMLRAGGGGGKKNRQKER 844
VT + + D S + L +S ++S + G+ M GGGGG R+K
Sbjct: 134 PVTAPAPSAVTAD-SPRKKSFWSFLYSSSSSSSGGHQGSAS--MANGGGGGGASVRRKSV 190
Query: 845 RLMKGFNIAPGGSLAPVDEFMSP 867
+ + + G L + E SP
Sbjct: 191 SVASASSASLGRRLEAIVEPDSP 213
>03_05_0197 + 21884415-21885332,21886130-21886750
Length = 512
Score = 30.3 bits (65), Expect = 8.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 738 LYAWRWLQRRLCGHARAKREHMRTIRAIMRNLVRRY 773
LY WL RRL G R R++ AIM +++R +
Sbjct: 237 LYPSSWLARRLSGAMRETERCNRSLMAIMDDIIREH 272
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.136 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,139,922
Number of Sequences: 37544
Number of extensions: 1228658
Number of successful extensions: 3725
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3718
Number of HSP's gapped (non-prelim): 13
length of query: 1024
length of database: 14,793,348
effective HSP length: 89
effective length of query: 935
effective length of database: 11,451,932
effective search space: 10707556420
effective search space used: 10707556420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)
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