GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001085-TA|BGIBMGA001085-PA|IPR004729|Transient receptor
potential channel, IPR002110|Ankyrin, IPR013555|Transient receptor ion
channel II, IPR005821|Ion transport, IPR001086|Prephenate dehydratase
         (1024 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    26   4.4  
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    26   4.4  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    26   5.8  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    26   5.8  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 832 GGGGGK--KNRQKERRLMKGFNIAPGGSLAPVDEFMSPV-SWLQHDHGVPHYSLSTLLGP 888
           GGGGG+   +R ++R    G N   GG    +D   + + S +    G          G 
Sbjct: 228 GGGGGRDRDHRDRDREREGGGNGGGGGGGMQLDGRGNAIPSMVVDRRGEDARGNIISDGG 287

Query: 889 RLRASQSSLSDGPGAGMSASRRKPQHKRR 917
           R+R+      D  G G+ A++++ Q ++R
Sbjct: 288 RIRSGDGG-RDSRGGGVDAAKKQHQQQQR 315


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 270 EHEFKTEYQELRVQCQEFATALLDHTRTSNELQILLNHEKGASPQAPLTEPGAPERMRLS 329
           E   K + ++LRV+ QE  T L+  +    +LQ   N  K      P  +PG P    +S
Sbjct: 88  EEAAKADNEKLRVEQQETHTTLIAISAQLRDLQ-QKNQMKRQQQHQPPQQPG-PSTSAVS 145

Query: 330 RLKLAIKLRQKKFVAHPNVQQLL 352
              + ++ + ++ + H +  +++
Sbjct: 146 LRNVEVQAQPEEDIDHSSFVEVV 168


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 751 HARAKREHMRTIRAIMRNLVRRYVTVQQRRAESGG 785
           H  A+ E  R IRA  RNL +  + + +  A   G
Sbjct: 380 HRTARAELSRAIRASKRNLFQELIEIAEENAFGAG 414


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 753  RAKREHMRTIRAIMRNLVRRYVTVQQRRAESG 784
            R   E +R  R  +RN+ RR  TV+QR  + G
Sbjct: 1040 RLDPEAVRCTRNDLRNVARRTQTVRQREEQCG 1071


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.136    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 972,354
Number of Sequences: 2123
Number of extensions: 38256
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 7
length of query: 1024
length of database: 516,269
effective HSP length: 71
effective length of query: 953
effective length of database: 365,536
effective search space: 348355808
effective search space used: 348355808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)