Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001085-TA|BGIBMGA001085-PA|IPR004729|Transient receptor
potential channel, IPR002110|Ankyrin, IPR013555|Transient receptor ion
channel II, IPR005821|Ion transport, IPR001086|Prephenate dehydratase
(1024 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49020.1 68416.m05355 F-box family protein contains F-box dom... 35 0.24
At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) near... 33 0.74
At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) near... 33 0.74
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c... 32 1.7
At1g60790.1 68414.m06843 expressed protein 32 2.3
At1g49970.1 68414.m05607 ATP-dependent Clp protease proteolytic ... 31 3.9
At5g53480.1 68418.m06646 importin beta-2, putative similar to im... 30 6.9
At2g24050.1 68415.m02873 MIF4G domain-containing protein / MA3 d... 30 6.9
At2g05920.1 68415.m00642 subtilase family protein contains simil... 30 6.9
At5g07840.1 68418.m00900 ankyrin repeat family protein contains ... 30 9.1
At3g55730.1 68416.m06191 myb family transcription factor (MYB109... 30 9.1
>At3g49020.1 68416.m05355 F-box family protein contains F-box domain
Pfam:PF00646
Length = 447
Score = 35.1 bits (77), Expect = 0.24
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 474 QLWDMGLREYVHDMWNVIDFVTNSLYVATVALRIVSHYQVRRE-MAMGLQWNQPR 527
QL + LR Y ++ WN++ F+ +S + L++V YQ +E ++G +W++P+
Sbjct: 310 QLLSLELRAYSYEWWNLLWFMLDSSPKLQI-LKLVDPYQFPKEDCSVGWEWSRPK 363
>At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 496
Score = 33.5 bits (73), Expect = 0.74
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 732 PSPKSLLYAWRWLQRRLCGHARAKREHMRTIRAIMRNL 769
P SL AW W ++ L HA KREH+ ++ + + L
Sbjct: 323 PHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGL 360
>At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 490
Score = 33.5 bits (73), Expect = 0.74
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 732 PSPKSLLYAWRWLQRRLCGHARAKREHMRTIRAIMRNL 769
P SL AW W ++ L HA KREH+ ++ + + L
Sbjct: 323 PHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGL 360
>At1g27750.1 68414.m03391 ubiquitin system component Cue
domain-containing protein very low similarity to ASC-1
complex subunit P100 [Homo sapiens] GI:12061187; contains
Pfam profile PF02845: CUE domain
Length = 1973
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 811 NSGMNTSTANAGAPEVMMLRAGGGGGKKNRQKERRLMK 848
NS +NT N G R GGGGG+ + K+R + K
Sbjct: 1928 NSEVNTEAENGGGRGRGRGRRGGGGGRNHNHKDRAMKK 1965
>At1g60790.1 68414.m06843 expressed protein
Length = 541
Score = 31.9 bits (69), Expect = 2.3
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 706 WKFARSKLWISYFEEGGTAPPPFNVLPSPKSLLYAW-RWLQRRL 748
W ++KL +Y++EG P VL + K L W +W+ + +
Sbjct: 367 WTHDKTKLGENYYQEGNVVYPRLKVLEAYKRALITWAKWVDKNI 410
>At1g49970.1 68414.m05607 ATP-dependent Clp protease proteolytic
subunit (ClpR1) (nClpP5) identical to nClpP5 GB:BAA82069
GI:5360595 from [Arabidopsis thaliana]; identical to
cDNA nClpP5 (nuclear encoded ClpP5) GI:5360594
Length = 387
Score = 31.1 bits (67), Expect = 3.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 812 SGMNTSTANAGAPEVMMLRAGGGGGKKNRQK 842
SGMN + A + V M R GGGGG R +
Sbjct: 136 SGMNAADARRYSMSVQMYRGGGGGGGSERPR 166
>At5g53480.1 68418.m06646 importin beta-2, putative similar to
importin-beta2 [Oryza sativa (japonica cultivar-group)]
GI:3983665; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 870
Score = 30.3 bits (65), Expect = 6.9
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 140 EEFVEAVEALLDHEERTRKPGEPNSWEAL-------PPETATFTSDITPLILAAHRDSYE 192
+E ++++ A+ E+ T ++EAL ET+T + P+I+ ++ E
Sbjct: 502 QEIIKSLLAVAHREDATESRLRTAAYEALNEVVRCSTDETSTMVLQLVPVIMMELHNTLE 561
Query: 193 IIKLLLDRGAQLPEPHDVRCGC 214
KL LD + E + CGC
Sbjct: 562 GEKLSLDEREKQNELQGLLCGC 583
>At2g24050.1 68415.m02873 MIF4G domain-containing protein / MA3
domain-containing protein similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 747
Score = 30.3 bits (65), Expect = 6.9
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 822 GAPEVMMLRAGGGGGKKNRQKER-RLMKGFNIAPGGS 857
G P V+ LR GGGGGK R F++ GGS
Sbjct: 5 GEPSVLSLRPGGGGGKSRLFVPRFSSSSSFDLTNGGS 41
>At2g05920.1 68415.m00642 subtilase family protein contains
similarity to cucumisin-like serine protease GI:3176874
from [Arabidopsis thaliana]
Length = 754
Score = 30.3 bits (65), Expect = 6.9
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 844 RRLMKGFNIAPGGSLAPVDEFMSPVSWLQHDHGVPHYSLSTLLGPRLR-ASQSSLSDGPG 902
R KGF +A GG + E +SP HG ++ +T G +R AS + G
Sbjct: 179 RSFSKGFQMASGGGFSSKRESVSPRD--VDGHGT--HTSTTAAGSAVRNASFLGYAAGTA 234
Query: 903 AGMSASRRKPQHKRRWGT 920
GM+ R +K W T
Sbjct: 235 RGMATRARVATYKVCWST 252
>At5g07840.1 68418.m00900 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 175
Score = 29.9 bits (64), Expect = 9.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 179 ITPLILAAHRDSYEIIKLLLDRGAQLPEPHDVRCG 213
+TPL LAA E++ LLL+RGA + CG
Sbjct: 69 MTPLHLAAKGGHIEVMDLLLERGANMEARTSGACG 103
>At3g55730.1 68416.m06191 myb family transcription factor (MYB109)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 399
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 457 EWLILA-WVSGLIWSEVKQLWDMGLREYVHDMWNVIDFVTNSLYVATV 503
+W ++A ++G + +K W+ LR D+WN ++ NS+ A+V
Sbjct: 129 KWAVIAKLLTGRTDNAIKNHWNSTLRRKYADLWNNGQWMANSVTTASV 176
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.136 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,464,448
Number of Sequences: 28952
Number of extensions: 902363
Number of successful extensions: 2147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2140
Number of HSP's gapped (non-prelim): 13
length of query: 1024
length of database: 12,070,560
effective HSP length: 88
effective length of query: 936
effective length of database: 9,522,784
effective search space: 8913325824
effective search space used: 8913325824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)
- SilkBase 1999-2023 -