Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001084-TA|BGIBMGA001084-PA|IPR003701|DNA repair
exonuclease, IPR004843|Metallophosphoesterase, IPR007281|Mre11,
DNA-binding
         (628 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    25   1.6  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    23   4.8  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    23   4.8  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    23   4.8  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    23   6.3  

>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 81  IRKYCLGDKPVSIELLSDQIKNFSRTVNYED 111
           IRKY LG+K +S +   D +  FS  +   D
Sbjct: 370 IRKYYLGEKKLSKKTFRDLVAMFSDRIFIND 400


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 81  IRKYCLGDKPVSIELLSDQIKNFSRTVNYED 111
           IRKY LG+K +S +   + +  FS  +   D
Sbjct: 370 IRKYYLGEKKLSKKTFRELVAMFSDRIFIND 400


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 81  IRKYCLGDKPVSIELLSDQIKNFSRTVNYED 111
           IRKY LG+K +S +   + +  FS  +   D
Sbjct: 370 IRKYYLGEKKLSKKTFRELVAMFSDRIFIND 400


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 81  IRKYCLGDKPVSIELLSDQIKNFSRTVNYED 111
           IRKY LG+K +S +   + +  FS  +   D
Sbjct: 370 IRKYYLGEKKLSKKTFRELVTMFSDRIFIND 400


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 81  IRKYCLGDKPVSIELLSDQIKNFSRTVNYED 111
           IRKY LG+K +S     + +  FS  +   D
Sbjct: 370 IRKYYLGEKKLSKRTFRELVAMFSDRIFIND 400


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,911
Number of Sequences: 317
Number of extensions: 5346
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 628
length of database: 114,650
effective HSP length: 61
effective length of query: 567
effective length of database: 95,313
effective search space: 54042471
effective search space used: 54042471
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)