Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001084-TA|BGIBMGA001084-PA|IPR003701|DNA repair
exonuclease, IPR004843|Metallophosphoesterase, IPR007281|Mre11,
DNA-binding
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)             217   2e-56
SB_44713| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-04
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  34   0.40 
SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.69 
SB_23572| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-22)                 32   1.2  
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               31   2.1  
SB_39803| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.8  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.7  
SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.9  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.5  
SB_53200| Best HMM Match : Apolipoprotein (HMM E-Value=0.0069)         29   8.5  
SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        29   8.5  

>SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score =  217 bits (530), Expect = 2e-56
 Identities = 128/281 (45%), Positives = 166/281 (59%), Gaps = 35/281 (12%)

Query: 19  IASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVNCMFKCT 78
           +A+D+HLG+ E D VRG DSF+ FEE L +A + +VD ILLGGDL+ + KPS   +    
Sbjct: 14  MATDVHLGYAEKDQVRGNDSFVTFEETLQIAKKRNVDFILLGGDLYHENKPSRRTLHASM 73

Query: 79  EIIRKYCLGDKPVSIELLSDQIKNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSS 138
            + RK+C+GD+   +E LSDQ  NF+          N  +P +    N++DP       S
Sbjct: 74  ALFRKFCMGDRVCEVEFLSDQSINFA----------NNRFPWV----NYEDP---NLNVS 116

Query: 139 LDILSITGLVNYFGKWTDYTHVRISPVLLQKGLTRLALYGLSHLKDQRLSRLFAEKKVEM 198
           + + SI G            H    P    KG T+LALYGL  ++D+RL R F   KV+M
Sbjct: 117 IPVFSIHG-----------NHD--DPA--GKGATKLALYGLGSVRDERLHRTFVNNKVKM 161

Query: 199 ERPDETLD-WFNLFVLHQNHADRGHSNYIPEGVLPNFLDLVVWGHEHDSHICPMKGNKTE 257
            RP E  D WFN FVLHQN A  GH+NYIPE  L  FLDLVVWGHEH+  I P + + T 
Sbjct: 162 LRPKEDPDSWFNAFVLHQNRAKHGHTNYIPEKFLDTFLDLVVWGHEHECLIDPRQSDDTS 221

Query: 258 KDSFFVVQPGSTVATSLAAGEALPKHCGLLEIHKGN-FKLT 297
              F++ QPGSTVATSL+ GE+  KH G+LEI     FK+T
Sbjct: 222 L-PFWITQPGSTVATSLSPGESKQKHVGILEIRPDKAFKMT 261



 Score = 42.3 bits (95), Expect = 0.001
 Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 9/161 (5%)

Query: 367 YERESQNFNRIRFGQNFNGLVANPNDLLIMXXXXXXXXXXXXXXXXXGDMTGVAAEAAD- 425
           Y    Q+F+ +RFGQ F   VANP D+L+                    +  +  EA D 
Sbjct: 265 YSGGFQSFSTLRFGQQFVDRVANPKDILLFHRKKVQQAKGIRPDIDE-KLLHLRPEALDN 323

Query: 426 --VESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAH---KRRCIA 480
             +E L++ Y  ++     L +LS   +  A+R+F  K  +D ++          ++ + 
Sbjct: 324 TRMEDLVKDYLRSKDNALDLQILSENRMAQALREFVDKDEKDAIQTLVSWQLEVTQKHLK 383

Query: 481 ALLESTAETEKEIAEQLEVCKR--ELDEADDEKLHTLVDAS 519
                TAE  +E A++    +R  E D+ ++E++  ++  S
Sbjct: 384 QRNNVTAENIEEAAQKYTELRRQKEGDQEEEEQIKKVLAES 424


>SB_44713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 45.6 bits (103), Expect = 1e-04
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 283 HCGLLEIHKGN-FKLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNR 337
           H G+LEI     FK+T +PLQTVRPF  + I+LS+ ++   D  + E++  FL ++
Sbjct: 2   HVGILEIRPDKAFKMTKVPLQTVRPFYMEDIILSDTDL---DPADEERIYAFLTDK 54


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 33.9 bits (74), Expect = 0.40
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 310  KTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTADLRQPLLPLIRLSIFYER 369
            + + L  + + S ++ E EKV+E +K  +NE + +  K+ + +LR+    LI     +E 
Sbjct: 1840 RALELDHDQMLSSEIREKEKVEEQMKREMNE-LKDGCKIHSNELRELKRQLITQKDVFEN 1898

Query: 370  ESQ--NFNRIR 378
            E +    NRIR
Sbjct: 1899 EVKLLQENRIR 1909


>SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 33.1 bits (72), Expect = 0.69
 Identities = 19/83 (22%), Positives = 35/83 (42%)

Query: 472 DAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQLIV 531
           D+H  +   A+L  T + E   A    VC+  L    ++K+  +  +S +  AP     +
Sbjct: 144 DSHDSKKDVAVLPKTEQEETVRATSAFVCQASLSNGGNKKVVVIQHSSQQAIAPTVLQTI 203

Query: 532 PVVKLPNTVGKRTIVVLSSDEEE 554
               +P+ V   T  V++    E
Sbjct: 204 ATSSIPSVVNSETAKVVTESVTE 226


>SB_23572| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-22)
          Length = 269

 Score = 32.3 bits (70), Expect = 1.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 307 FIFKTIVLSEENIGSEDVNENEKVQEFLKNR 337
           FIFK+     + I SE V E +K  E LKNR
Sbjct: 186 FIFKSAKYQRQRIASESVTERKKRNEILKNR 216


>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 4/118 (3%)

Query: 431 RAYYEAQPKDKRLSV-LSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAET 489
           R Y+E Q  +   ++  +   + DA     L+  E+   R  +  K +  A L    A++
Sbjct: 506 RKYFEDQVSEHEATMDFAADNLADAQARLDLRTKEE--NRKIEEAKEK-FAELQTRLAKS 562

Query: 490 EKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQLIVPVVKLPNTVGKRTIVV 547
            KE+ E+LE  + + + A DE+ + +        A  ++L   V  L    GK  + +
Sbjct: 563 AKELEEELERKREDYNTAADERRYQMAKKKDTLQATRSELETLVKDLSTKTGKERLAL 620


>SB_39803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 322 EDVNENEKVQEFLKNRVNEAIDEASKLKTADLRQPLLP 359
           ED+++ + + E LK R  + I+E  +L    L  P++P
Sbjct: 3   EDLHQGDDMMEDLKTRRQQRIEEVFRLSVCQLNSPIVP 40


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 101  KNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNYFGKWTDYTHV 160
            ++F+  ++ +DP + IS    +++ N DD V    V S+++    G  N   + T YT  
Sbjct: 4315 ESFTVVLSSDDPTVTISPDTATVNINDDDAVVAFKVPSMEVPERVGNANVILERTGYTET 4374

Query: 161  R 161
            +
Sbjct: 4375 K 4375


>SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 9/29 (31%), Positives = 22/29 (75%)

Query: 43  EEVLSLAVQCDVDLILLGGDLFDQAKPSV 71
           +++++  V+ +VD++++ GDL D  +PS+
Sbjct: 110 DKIVNKVVEAEVDIVVITGDLIDSGEPSL 138


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 464  EDVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEAD 508
            +D++ R  D  KR  + +      +TE+++A +L+ CK  +DE D
Sbjct: 2646 DDIIERISDTCKRLSLCSY--EPKDTEEDLARKLQECKVLVDEMD 2688


>SB_53200| Best HMM Match : Apolipoprotein (HMM E-Value=0.0069)
          Length = 246

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 19/57 (33%), Positives = 25/57 (43%)

Query: 459 TLKHNEDVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTL 515
           TL  + D      D      +  L ES  E+ + + E LE     LDE+ DE L TL
Sbjct: 154 TLDESLDESLETLDESLDESLETLDESLDESLETLDESLETLDESLDESLDESLETL 210


>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 9/66 (13%)

Query: 453 DAVRDFTLKHNEDVLRRAFDAHKRRCIAAL-------LESTAETEKEIAEQLEVCKRELD 505
           +A+R+  L+    VL+ +   H++R ++A        LE +    K+I  +L+V  ++LD
Sbjct: 47  EALRESELEMERQVLQES--QHEKRVLSARVDDLASRLEQSERERKQIVNELDVAVKKLD 104

Query: 506 EADDEK 511
           +AD  K
Sbjct: 105 QADGGK 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,992,824
Number of Sequences: 59808
Number of extensions: 755663
Number of successful extensions: 1923
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1885
Number of HSP's gapped (non-prelim): 37
length of query: 628
length of database: 16,821,457
effective HSP length: 86
effective length of query: 542
effective length of database: 11,677,969
effective search space: 6329459198
effective search space used: 6329459198
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)