Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001084-TA|BGIBMGA001084-PA|IPR003701|DNA repair
exonuclease, IPR004843|Metallophosphoesterase, IPR007281|Mre11,
DNA-binding
         (628 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   1.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   1.1  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              24   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   10.0 

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 126 NHDDPVGQGSVSSLDILSITG-LVNYFGKWTDYTHVRISPVLLQK---GLTRLALYGLSH 181
           + D PV + S   L I+ + G LV Y   +           +LQ+   G++  A+YG   
Sbjct: 540 HRDTPVVRASGRELTIILLAGVLVCYLNTFLLLATPTTVTCILQRFGVGVSFSAVYGALL 599

Query: 182 LKDQRLSRLFAEKKVEMERP 201
            K  R++R+F        RP
Sbjct: 600 TKTNRIARIFDSASRTAVRP 619


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 126 NHDDPVGQGSVSSLDILSITG-LVNYFGKWTDYTHVRISPVLLQK---GLTRLALYGLSH 181
           + D PV + S   L I+ + G LV Y   +           +LQ+   G++  A+YG   
Sbjct: 630 HRDTPVVRASGRELTIILLAGVLVCYLNTFLLLATPTTVTCILQRFGVGVSFSAVYGALL 689

Query: 182 LKDQRLSRLFAEKKVEMERP 201
            K  R++R+F        RP
Sbjct: 690 TKTNRIARIFDSASRTAVRP 709


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 285 GLLEIHKGNFKLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFL------KNRV 338
           G+ E  + +F+   + ++  +  +F   ++ + N   +  N NE V   +      +N V
Sbjct: 38  GIDEKKEDDFRNGIIDVENEKVQLFSECLIKKFNAYDDGGNFNEVVVREIAEIYLDENEV 97

Query: 339 NEAIDEASKLKTADLRQPLLPLIRLSIFYERESQNFN 375
           N+ I E S +  AD+      LI+    Y+   +  N
Sbjct: 98  NKLITECSAISDADIHLKSSKLIKCFAKYKTLKEIMN 134


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 3   ENDISAWSPDDTLRILIASDIHLG 26
           EN+I A  P DT+ I+ A +   G
Sbjct: 955 ENEIGASDPSDTVTIITAEEAPSG 978


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 300 PLQTVRPFIFKTIVLSEENIGSEDVNENEKVQE 332
           PL + R F   T +L +EN+     +E + + E
Sbjct: 278 PLSSRREFAVSTRILRDENLSQNSYHEFQILPE 310


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,256
Number of Sequences: 429
Number of extensions: 6465
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 5
length of query: 628
length of database: 140,377
effective HSP length: 62
effective length of query: 566
effective length of database: 113,779
effective search space: 64398914
effective search space used: 64398914
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)