Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001084-TA|BGIBMGA001084-PA|IPR003701|DNA repair
exonuclease, IPR004843|Metallophosphoesterase, IPR007281|Mre11,
DNA-binding
(628 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11) ... 346 2e-95
At3g16320.1 68416.m02061 cell division cycle family protein / CD... 35 0.19
At3g02125.1 68416.m00179 hypothetical protein 35 0.19
At3g18380.2 68416.m02338 expressed protein 32 1.00
At3g53350.1 68416.m05886 myosin heavy chain-related low similari... 32 1.3
At2g27880.1 68415.m03380 argonaute protein, putative / AGO, puta... 32 1.3
At2g35140.1 68415.m04310 expressed protein ; expression supporte... 31 2.3
At5g23770.1 68418.m02791 agenet domain-containing protein contai... 30 4.0
At4g21680.1 68417.m03140 proton-dependent oligopeptide transport... 29 7.0
At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly ident... 29 7.0
At3g53350.3 68416.m05888 myosin heavy chain-related low similari... 29 9.3
At3g53350.2 68416.m05887 myosin heavy chain-related low similari... 29 9.3
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 29 9.3
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 9.3
>At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11)
identical to DNA repair and meiosis protein (Mre11)
GI:5524769 from [Arabidopsis thaliana]
Length = 720
Score = 346 bits (851), Expect = 2e-95
Identities = 180/396 (45%), Positives = 246/396 (62%), Gaps = 20/396 (5%)
Query: 13 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVN 72
DTLR+L+A+D HLG+ME D +R DSF AFEE+ S+A + VD +LLGGDLF + KPS
Sbjct: 8 DTLRVLVATDCHLGYMEKDEIRRHDSFKAFEEICSIAEEKQVDFLLLGGDLFHENKPSRT 67
Query: 73 CMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSRT---VNYEDPNLNISYPILSIHGNHDD 129
+ K EI+R++CL DKPV +++SDQ NF VNYEDP+ N+ P+ SIHGNHDD
Sbjct: 68 TLVKAIEILRRHCLNDKPVQFQVVSDQTVNFQNAFGQVNYEDPHFNVGLPVFSIHGNHDD 127
Query: 130 PVGQGSVSSLDILSITGLVNYFGKW----TDYTHVRISPVLLQKGLTRLALYGLSHLKDQ 185
P G ++S++DILS LVNYFGK + + + P+L++KG T +ALYGL +++D+
Sbjct: 128 PAGVDNLSAIDILSACNLVNYFGKMVLGGSGVGQITLYPILMKKGSTTVALYGLGNIRDE 187
Query: 186 RLSRLF-AEKKVEMERPD-----ETLDWFNLFVLHQNHADRGHSNYIPEGVLPNFLDLVV 239
RL+R+F V+ RP+ + DWFN+ VLHQN N I E LP FLD +V
Sbjct: 188 RLNRMFQTPHAVQWMRPEVQEGCDVSDWFNILVLHQNRVKSNPKNAISEHFLPRFLDFIV 247
Query: 240 WGHEHDSHICPMKGNKTEKDSFFVVQPGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPL 299
WGHEH+ C + + F + QPGS+VATSL GE+ PKH LLEI ++ T +
Sbjct: 248 WGHEHE---CLIDPQEVSGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKI 304
Query: 300 PLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTADLRQPLLP 359
PL +VRPF + IVL +E+ D N+ + E L V I++ASK K + + LP
Sbjct: 305 PLTSVRPFEYTEIVLKDES--DIDPNDQNSILEHLDKVVRNLIEKASK-KAVNRSEIKLP 361
Query: 360 LIRLSIFYERESQNFNRIRFGQNFNGLVANPNDLLI 395
L+R+ + Y N RFGQ + G VANP D+LI
Sbjct: 362 LVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDILI 396
>At3g16320.1 68416.m02061 cell division cycle family protein / CDC
family protein similar to SP|P30260|CC27_HUMAN Protein
CDC27Hs (Cell division cycle protein 27 homolog) Homo
sapiens, C-terminus similar to C-term of cell division
control protein 27 SP:P38042 (Saccharomyces cerevisiae);
contains Pfam profile PF00515 TPR Domain
Length = 727
Score = 34.7 bits (76), Expect = 0.19
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 432 AYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEK 491
A +E++ D+ L ++ V+TDA + +L D HK + + L+ A E
Sbjct: 610 ALHESKRNDEALMMMEKAVLTDAKNPLPKYYKAHILTSLGDYHKAQKVLEELKECAPQES 669
Query: 492 EIAEQLEVCKRELDEADDEKLH--TLVDASARPS 523
+ L +L + D LH +D S PS
Sbjct: 670 SVHASLGKIYNQLKQYDKAVLHFGIALDLSPSPS 703
>At3g02125.1 68416.m00179 hypothetical protein
Length = 355
Score = 34.7 bits (76), Expect = 0.19
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 240 WGHEHDSHICPMKGNKTEK--DSFFVVQPGSTVATSLAAGEALPKHCGLLEIHKGNFKL- 296
W H +H+ + G + S F +PG++ SLA+ E+ L IH GNF +
Sbjct: 75 WSSNHQNHLIDLPGYDPTRIPSSVFSSKPGNSTEWSLASNES------LFSIHDGNFSIS 128
Query: 297 TPLPLQTVRPFIFKTIVLSEEN 318
T L L + F V++E N
Sbjct: 129 TALRLAEIPRFEETVHVITEIN 150
>At3g18380.2 68416.m02338 expressed protein
Length = 349
Score = 32.3 bits (70), Expect = 1.00
Identities = 19/90 (21%), Positives = 41/90 (45%)
Query: 465 DVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSA 524
D RR D RC + S ++E+EI ++C+R + ++LH V+ A +
Sbjct: 235 DAQRRRHDVRGCRCRFLVRYSHDQSEQEIVPLRKICRRPETDYRLQQLHNAVNDLANSNQ 294
Query: 525 PAAQLIVPVVKLPNTVGKRTIVVLSSDEEE 554
+ K P ++ T+ +++ + ++
Sbjct: 295 HQIPALDAAAKTPLSLPGATVPIVAPESKD 324
>At3g53350.1 68416.m05886 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 396
Score = 31.9 bits (69), Expect = 1.3
Identities = 22/95 (23%), Positives = 39/95 (41%)
Query: 435 EAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEKEIA 494
E+ PK K +S + + R + NE +R + + L+ + KE
Sbjct: 35 ESDPKTKTISKTQIPKVVADRRSARIPLNEIQKKRTGRIPELESTISQLQEELKKAKEEL 94
Query: 495 EQLEVCKRELDEADDEKLHTLVDASARPSAPAAQL 529
+ E KRE E ++ H L+D +A + +L
Sbjct: 95 NRSEALKREAQEEAEDAKHQLMDINASEDSRIEEL 129
>At2g27880.1 68415.m03380 argonaute protein, putative / AGO,
putative similar to SP|O04379 Argonaute protein (AGO1)
{Arabidopsis thaliana}; contains Pfam profiles PF02170:
PAZ domain, PF02171: Piwi domain
Length = 997
Score = 31.9 bits (69), Expect = 1.3
Identities = 18/67 (26%), Positives = 29/67 (43%)
Query: 208 FNLFVLHQNHADRGHSNYIPEGVLPNFLDLVVWGHEHDSHICPMKGNKTEKDSFFVVQPG 267
F+ +LH+ A R N + E +P ++V H GN+ D +QPG
Sbjct: 814 FSQVLLHEMTAIRKACNSLQENYVPRVTFVIVQKRHHTRLFPEQHGNRDMTDKSGNIQPG 873
Query: 268 STVATSL 274
+ V T +
Sbjct: 874 TVVDTKI 880
>At2g35140.1 68415.m04310 expressed protein ; expression supported
by MPSS
Length = 879
Score = 31.1 bits (67), Expect = 2.3
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 177 YGLSHLKDQRLSRLFAEKKVEMERPDETLDWFNLFVLHQNHADRGHSN 224
+GLS + QRL +LF+ KKVE R ET L DRG N
Sbjct: 133 FGLSKAQVQRLLKLFSMKKVERSRLRETAAPKPLRKSENTVGDRGFRN 180
>At5g23770.1 68418.m02791 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 438
Score = 30.3 bits (65), Expect = 4.0
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 468 RRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASA 520
+ + A +R I L E +KEIA+ + + + DD KL L ASA
Sbjct: 384 KESVKAENKRKILELQRLNEEMDKEIAQSKSCAAKIVQQLDDVKLEFLATASA 436
>At4g21680.1 68417.m03140 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 589
Score = 29.5 bits (63), Expect = 7.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 135 SVSSLDILSITGLVNYFGKWTDYTHVRISPVLLQKGLTRLALYGL 179
S+SS DILS+ + + ++ D R++ KGLT L G+
Sbjct: 381 SMSSFDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTELQRMGI 425
>At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly
identical to ania-6a type cyclin [Arabidopsis thaliana]
GI:13924511
Length = 416
Score = 29.5 bits (63), Expect = 7.0
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 179 LSHLKDQRLSRLFAEKKVEMERPDETLDWFNLFVLHQNHADRGHSNYIPEGVLPNFLDLV 238
L HL ++ F+E KVE+ R + + FV H H + SNY+ P L
Sbjct: 117 LEHL--DMYAKKFSELKVELSRTERHILKEMGFVCHVEHPHKFISNYLATLETPPELRQE 174
Query: 239 VWGHEHDS 246
W +DS
Sbjct: 175 AWNLANDS 182
>At3g53350.3 68416.m05888 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 394
Score = 29.1 bits (62), Expect = 9.3
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 435 EAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEKEIA 494
E+ PK K +S + + R + NE +R + + L+ + KE
Sbjct: 35 ESDPKTKTISKTQIPKVVADRRSARIPLNEK--KRTGRIPELESTISQLQEELKKAKEEL 92
Query: 495 EQLEVCKRELDEADDEKLHTLVDASARPSAPAAQL 529
+ E KRE E ++ H L+D +A + +L
Sbjct: 93 NRSEALKREAQEEAEDAKHQLMDINASEDSRIEEL 127
>At3g53350.2 68416.m05887 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 394
Score = 29.1 bits (62), Expect = 9.3
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 435 EAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEKEIA 494
E+ PK K +S + + R + NE +R + + L+ + KE
Sbjct: 35 ESDPKTKTISKTQIPKVVADRRSARIPLNEK--KRTGRIPELESTISQLQEELKKAKEEL 92
Query: 495 EQLEVCKRELDEADDEKLHTLVDASARPSAPAAQL 529
+ E KRE E ++ H L+D +A + +L
Sbjct: 93 NRSEALKREAQEEAEDAKHQLMDINASEDSRIEEL 127
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 29.1 bits (62), Expect = 9.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 316 EENIGSEDVNENEKVQEFLKNRVNEAIDEASKL 348
EENI S+ V+ + F + +NE D ASKL
Sbjct: 187 EENIPSKSVDADTNADAFEDSMLNEIFDNASKL 219
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 29.1 bits (62), Expect = 9.3
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 435 EAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEKEIA 494
E + K+KR+ +L V ++D K ED+ ++ + K R EKE+
Sbjct: 1512 EREEKEKRIQILDKYV--HQLKDEVRKKTEDLKKKDEELTKER------SERKSVEKEVG 1563
Query: 495 EQLEVCKRELDEADDE 510
+ L K+E + D+E
Sbjct: 1564 DSLTKIKKEKTKVDEE 1579
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.135 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,671,082
Number of Sequences: 28952
Number of extensions: 560746
Number of successful extensions: 1501
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1486
Number of HSP's gapped (non-prelim): 15
length of query: 628
length of database: 12,070,560
effective HSP length: 85
effective length of query: 543
effective length of database: 9,609,640
effective search space: 5218034520
effective search space used: 5218034520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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