Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001084-TA|BGIBMGA001084-PA|IPR003701|DNA repair
exonuclease, IPR004843|Metallophosphoesterase, IPR007281|Mre11,
DNA-binding
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773... 340 2e-93
08_01_0522 - 4545166-4545174,4545295-4545447,4545566-4545727,454... 320 3e-87
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322... 31 2.8
05_01_0217 + 1630083-1630205,1630467-1630710,1631695-1632508,163... 30 4.8
01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535 30 4.8
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518... 30 6.4
08_02_1473 - 27358162-27358275,27358968-27359024,27359102-273592... 29 8.5
06_03_1053 + 27224824-27225618 29 8.5
03_06_0588 - 34924061-34924644,34924662-34925058 29 8.5
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559 29 8.5
02_03_0359 + 18098043-18098435,18098526-18098642,18098913-18099032 29 8.5
>04_04_1284 +
32376870-32376874,32376876-32376935,32377166-32377301,
32377439-32377596,32377791-32377881,32377975-32378094,
32378166-32378234,32378354-32378445,32378578-32378680,
32378761-32378868,32378949-32379011,32379073-32379144,
32379322-32379399,32379478-32379540,32379617-32379680,
32379817-32379902,32380456-32380569,32380760-32380837,
32381068-32381303,32381486-32381576,32381706-32381894,
32382082-32382117
Length = 703
Score = 340 bits (836), Expect = 2e-93
Identities = 183/396 (46%), Positives = 246/396 (62%), Gaps = 20/396 (5%)
Query: 13 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVN 72
+TLR+L+A+D HLG+ME D +R DSF AFEE+ SLA Q VD +LLGGDLF + KPS +
Sbjct: 27 NTLRVLVATDCHLGYMEKDEIRRFDSFEAFEEICSLAEQNKVDFVLLGGDLFHENKPSRS 86
Query: 73 CMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSR---TVNYEDPNLNISYPILSIHGNHDD 129
+ K EI+R+YCL D+PV +++SDQ NF VNYEDPN N+ P+ +IHGNHDD
Sbjct: 87 TLVKTIEILRRYCLNDQPVKFQVVSDQTINFPNRFGQVNYEDPNFNVGLPVFTIHGNHDD 146
Query: 130 PVGQGSVSSLDILSITGLVNYFGKW----TDYTHVRISPVLLQKGLTRLALYGLSHLKDQ 185
P G ++S++DILS LVNYFGK + + + PVL++KG T +ALYGL +++D+
Sbjct: 147 PAGVDNLSAIDILSACNLVNYFGKMDLGGSGVGEIAVYPVLVKKGTTFVALYGLGNIRDE 206
Query: 186 RLSRLF-AEKKVEMERPD-----ETLDWFNLFVLHQNHADRGHSNYIPEGVLPNFLDLVV 239
RL+R+F V+ RP+ DWFN+ VLHQN + I E LP FLD +V
Sbjct: 207 RLNRMFQTPHAVQWMRPETQDGMSVSDWFNILVLHQNRIKTNPKSAINEHFLPRFLDFIV 266
Query: 240 WGHEHDSHICPMKGNKTEKDSFFVVQPGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPL 299
WGHEH+ C + + F + QPGS+VATSL GEA PKH LLEI ++ T +
Sbjct: 267 WGHEHE---CLIDPQEVPGMGFHITQPGSSVATSLIDGEAKPKHVLLLEIKGNQYRPTKI 323
Query: 300 PLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTADLRQPLLP 359
PL++VRPF + +VL +E D N+ V E L V I ++S+ TA + LP
Sbjct: 324 PLRSVRPFHYAEVVLKDE--VDVDPNDQASVLEHLDKIVRNLIKKSSQ-PTASRPETKLP 380
Query: 360 LIRLSIFYERESQNFNRIRFGQNFNGLVANPNDLLI 395
LIR+ + Y S N RFGQ + G VANP D+LI
Sbjct: 381 LIRIKVDYSGFS-TINPQRFGQKYVGKVANPQDILI 415
>08_01_0522 -
4545166-4545174,4545295-4545447,4545566-4545727,
4545821-4545895,4545974-4546087,4546257-4546339,
4546496-4546556,4546664-4546726,4546804-4546908,
4547454-4547525,4547602-4547664,4547746-4547853,
4547937-4548039,4548131-4548207,4548335-4548403,
4548488-4548607,4548749-4548839,4549020-4549177,
4549696-4549834,4551164-4551186
Length = 615
Score = 320 bits (785), Expect = 3e-87
Identities = 194/519 (37%), Positives = 285/519 (54%), Gaps = 37/519 (7%)
Query: 7 SAWSPDDT--LRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLF 64
++W ++ LRIL+A+D HLG++E D +R DSF FEE+ SLAV VD ILLGG+LF
Sbjct: 6 ASWDEEENSMLRILVATDCHLGYLEKDEIRRFDSFDTFEEICSLAVINKVDFILLGGNLF 65
Query: 65 DQAKPSVNCMFKCTEIIRKYCLGDKPVSIELLSDQ---IKNFSRTVNYEDPNLNISYPIL 121
+ KPS++ + K EIIR YCL D V +++SDQ ++N VN+EDPN NI P+
Sbjct: 66 HENKPSISTLVKSMEIIRSYCLNDHQVQFQVVSDQAACLQNRFGRVNFEDPNFNIGLPVF 125
Query: 122 SIHGNHDDPVGQGSVSSLDILSITGLVNYFGK----WTDYTHVRISPVLLQKGLTRLALY 177
++HG HD P G +S+ DILS VNYFGK +D + + PV ++KG T +ALY
Sbjct: 126 TVHGTHDGPAGVDGLSATDILSACNFVNYFGKVDPGSSDVDQISVCPVFIKKGATSVALY 185
Query: 178 GLSHLKDQRLSRLF-AEKKVEMERPDETLDWFNLFVLHQNHADRGHSNYIPEGVLPNFLD 236
GL +++D++LSR+ K++ + D DWFNLFV HQ +N I E +LP+FLD
Sbjct: 186 GLGNIRDEKLSRMLQTHYKIQWMKADSEDDWFNLFVFHQKRRKGSSTNGINEQLLPSFLD 245
Query: 237 LVVWGHEHDSHICPMKGNKTEKDSFFVVQPGSTVATSLAAGEALPKHCGLLEIHKGNFKL 296
LV+WGHEH+ C + + F ++ PGS+VATSL+ EA PK+ LLEI +K
Sbjct: 246 LVIWGHEHE---CLIDHQEVSGKDFHIIHPGSSVATSLSNAEAKPKNVVLLEIKGMQYKQ 302
Query: 297 TPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKN-----RVNEAIDEASKL--K 349
T +PL++VRPF + + L ++ +G E +N + E L N +N + + S L K
Sbjct: 303 TNIPLKSVRPFQYAEVQLKDQ-LGVE-LNNEAALYEHLDNIFSAVLLNTELFQVSNLIDK 360
Query: 350 TA-DLRQPLLPLIRLSIFYERESQNFNRIRFGQNFNGLVANPNDLLIMXXXXXXXXXXXX 408
TA +P LPL+R+ + Y S RFGQ + G VANPND+++
Sbjct: 361 TAISGSEPKLPLVRVKVDYSGFS-TITPQRFGQKYVGKVANPNDIILF----SRSAQQNR 415
Query: 409 XXXXXGDMTGVAAEAADVESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHN----E 464
G D +S+ E+ + + +L + A+ DF K
Sbjct: 416 TREHTGSSEECEPNELDQQSIEELIAES---NLNMQILDKNDLDSALHDFVNKDENMAFH 472
Query: 465 DVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRE 503
L + DA K++ A + A E++I QL+ C +E
Sbjct: 473 SCLDKNIDAAKKKLTFATKDLKA--EEDIVLQLDQCMQE 509
>08_02_1482 -
27428208-27428514,27428605-27428906,27431176-27432228,
27432305-27432421,27432510-27432843,27433064-27433188,
27433408-27433475,27433555-27433636,27433753-27433866,
27433942-27434042,27434145-27434234,27434615-27434819
Length = 965
Score = 31.1 bits (67), Expect = 2.8
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 433 YYEAQP-KDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEK 491
Y E P ++ L ++ + +AVRD L H+ LR D K + L E T +
Sbjct: 129 YIEKHPEREFILRFSAIEIYNEAVRDL-LSHDTTPLRLLDDPEKGTTVEKLTEETLRDKD 187
Query: 492 EIAEQLEVCKRE 503
+ L VC+ +
Sbjct: 188 HLRNLLAVCEAQ 199
>05_01_0217 +
1630083-1630205,1630467-1630710,1631695-1632508,
1632775-1632844,1633007-1633239,1633345-1633564
Length = 567
Score = 30.3 bits (65), Expect = 4.8
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 439 KDKRLSVLSVRVIT---DAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEKEIAE 495
++KR+ + R + +RD +L ED +RR + C A+L + + +K+ E
Sbjct: 68 REKRVGAIEYRHFVCSKEGIRDPSLVKPEDCVRRERALTQMECAASL---SIKLDKKHVE 124
Query: 496 QLEVCKRELDE 506
EVC EL E
Sbjct: 125 HYEVCVSELRE 135
>01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535
Length = 263
Score = 30.3 bits (65), Expect = 4.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 217 HADRGHSNYIPEGVLPNFLDLVVWGHEHDSHICP 250
H D+G ++PEGV P + +LV +H S++ P
Sbjct: 129 HQDKGPV-FLPEGVFPPYRNLVTGNKQHASNVPP 161
>05_04_0275 -
19650555-19650625,19650927-19651221,19651593-19651895,
19651978-19652182,19652266-19652501,19652619-19652816,
19653785-19653907,19654227-19654514,19654618-19654794,
19655580-19655915,19656753-19656863,19656977-19657227,
19657431-19657566
Length = 909
Score = 29.9 bits (64), Expect = 6.4
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 113 NLNISYPILSIHGNHDDPVGQGSVSSLDILSI 144
+++I Y IL + G D PVG+GS S+L S+
Sbjct: 554 SIDIVYDILHMMGRDDIPVGRGSTSALGTESL 585
>08_02_1473 -
27358162-27358275,27358968-27359024,27359102-27359245,
27359770-27359934,27360020-27360208,27360301-27360535,
27360826-27360932,27361020-27361103,27361185-27361695,
27361793-27361854,27363373-27363456
Length = 583
Score = 29.5 bits (63), Expect = 8.5
Identities = 19/91 (20%), Positives = 39/91 (42%)
Query: 461 KHNEDVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASA 520
+ +D + +A + + + A E+ + AE+ ++ E ++++ L +
Sbjct: 422 EQQDDEYLASLEADREKELKAEQEAELRRLEAAAEREAAIAKQKQEEEEKRRKQLEEEEL 481
Query: 521 RPSAPAAQLIVPVVKLPNTVGKRTIVVLSSD 551
A Q +P LP+ VG T+VV D
Sbjct: 482 ESKLAAKQASLPKEPLPDDVGAVTVVVRMPD 512
>06_03_1053 + 27224824-27225618
Length = 264
Score = 29.5 bits (63), Expect = 8.5
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 445 VLSVRVITDAVRDFTLKHN-EDVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRE 503
+L RV D R K E++ R F+ +RR A+L E+ + A +LE + E
Sbjct: 88 LLLERVSEDDARRLERKLKVEELARGKFELRRRRLTASLKEALVKAGGR-APKLETIQEE 146
Query: 504 LDEADDEKLHTLVDASARPSAPAA 527
D+ DD+ H D+ R A AA
Sbjct: 147 EDDDDDDS-HG--DSKRRRKAAAA 167
>03_06_0588 - 34924061-34924644,34924662-34925058
Length = 326
Score = 29.5 bits (63), Expect = 8.5
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 3 ENDISAWSPD--DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 54
END AW PD + A + L F + V S IA +V L +CDV
Sbjct: 52 ENDFIAWHPDKHGIFSVRSAYSLALDFSRTE-VSSSSSSIAMSKVWKLVWKCDV 104
>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
Length = 789
Score = 29.5 bits (63), Expect = 8.5
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 459 TLKHNEDVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLH 513
T+ ED ++AFDA + I L++ T E E+E LEV LD+A + ++H
Sbjct: 278 TMAETEDAAKKAFDAIDKVGI-PLMDRTEEEEEEGEAYLEV---PLDQAMEMEVH 328
>02_03_0359 + 18098043-18098435,18098526-18098642,18098913-18099032
Length = 209
Score = 29.5 bits (63), Expect = 8.5
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 436 AQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEKEIAE 495
A D S S R + A+R + +ED RR+ AH RRC++ + T + +E
Sbjct: 87 AAADDGTRSAASARKLVGALRQLSSPDDEDAARRS-SAH-RRCVSVEFSKRSRTRSKASE 144
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,420,955
Number of Sequences: 37544
Number of extensions: 658103
Number of successful extensions: 1789
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1773
Number of HSP's gapped (non-prelim): 11
length of query: 628
length of database: 14,793,348
effective HSP length: 86
effective length of query: 542
effective length of database: 11,564,564
effective search space: 6267993688
effective search space used: 6267993688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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