GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001084-TA|BGIBMGA001084-PA|IPR003701|DNA repair
exonuclease, IPR004843|Metallophosphoesterase, IPR007281|Mre11,
DNA-binding
         (628 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    27   1.1  
AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription fact...    27   1.1  
AY176050-1|AAO19581.1|  522|Anopheles gambiae cytochrome P450 CY...    25   6.0  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 18/89 (20%), Positives = 40/89 (44%)

Query: 419 VAAEAADVESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRC 478
           V  + A++  +     E + + + +S    ++   A R   LK   D+L    +  K+R 
Sbjct: 672 VLLDVAEINRIQAMLQEKEAELRDISAEVSKIEKTAHRFGQLKEQHDMLNYELNNLKQRL 731

Query: 479 IAALLESTAETEKEIAEQLEVCKRELDEA 507
                + T E  +E+ +++E  ++ + EA
Sbjct: 732 AQTSFQQTKEEIEELNKKIETLQKTIVEA 760


>AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription factor
           protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 467 LRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRE 503
           L++ F+A ++R      E    T++E+ E+ E+ +RE
Sbjct: 148 LKQRFEAERKRTRVIRTEEYIPTQEELLEEAEITERE 184


>AY176050-1|AAO19581.1|  522|Anopheles gambiae cytochrome P450
           CYP12F2 protein.
          Length = 522

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 140 DILSITG-LVNYFGKWTDYTHVRISPVLLQKGLTRLALYGLSHLKDQRLSRLFAEKKVEM 198
           DI S TG LV   G+        ++PV++Q    +L +  +  +  + ++ +   +  + 
Sbjct: 137 DIFSETGGLVTEHGEKWQKVRTIVNPVMMQPKTIKLYVDQVDEIAREFMTLVAGMRDEKN 196

Query: 199 ERPDETLDWFNLFVL 213
           E P +   W N + L
Sbjct: 197 ELPKDFDQWLNRWAL 211


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,906
Number of Sequences: 2123
Number of extensions: 22384
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 3
length of query: 628
length of database: 516,269
effective HSP length: 68
effective length of query: 560
effective length of database: 371,905
effective search space: 208266800
effective search space used: 208266800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)