Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001084-TA|BGIBMGA001084-PA|IPR003701|DNA repair
exonuclease, IPR004843|Metallophosphoesterase, IPR007281|Mre11,
DNA-binding
(628 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF132144-1|AAD33591.1| 620|Drosophila melanogaster endo/exonucl... 449 e-126
AE014134-2061|AAF53093.1| 620|Drosophila melanogaster CG16928-P... 449 e-126
AE014297-1413|AAF54724.2| 573|Drosophila melanogaster CG12213-P... 33 1.6
AE014297-1412|AAN13537.1| 506|Drosophila melanogaster CG12213-P... 33 1.6
X53992-1|CAA37939.1| 1645|Drosophila melanogaster betaH spectrin... 31 3.6
BT011336-1|AAR96128.1| 914|Drosophila melanogaster SD02170p pro... 31 3.6
BT001607-1|AAN71362.1| 604|Drosophila melanogaster RE31467p pro... 31 3.6
AE014296-651|AAF47766.1| 4097|Drosophila melanogaster CG12008-PA... 31 3.6
AE014296-650|AAS64958.1| 4118|Drosophila melanogaster CG12008-PB... 31 3.6
AE014296-649|AAS64957.1| 4207|Drosophila melanogaster CG12008-PC... 31 3.6
AE013599-3654|AAM68265.1| 904|Drosophila melanogaster CG5411-PB... 31 3.6
AE013599-3653|AAM68264.1| 805|Drosophila melanogaster CG5411-PD... 31 3.6
AE013599-3651|AAM68263.1| 914|Drosophila melanogaster CG5411-PA... 31 3.6
AM294540-1|CAL26523.1| 431|Drosophila melanogaster CG3975 protein. 31 6.3
AF201919-1|AAF71697.1| 97|Drosophila melanogaster CRC-D protein. 31 6.3
AE014134-3388|ABC65922.1| 105|Drosophila melanogaster CG8669-PD... 31 6.3
>AF132144-1|AAD33591.1| 620|Drosophila melanogaster
endo/exonuclease Mre11 protein.
Length = 620
Score = 449 bits (1106), Expect = e-126
Identities = 235/506 (46%), Positives = 320/506 (63%), Gaps = 23/506 (4%)
Query: 12 DDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSV 71
D+ +RIL+A+D HLG+ E D VRGEDSF AFEE+L LAV DVD+ILLGGDLF A PS
Sbjct: 12 DNVIRILVATDNHLGYGEKDAVRGEDSFTAFEEILELAVSEDVDMILLGGDLFHDAVPSQ 71
Query: 72 NCMFKCTEIIRKYCLGDKPVSIELLSDQIKNF----SRTVNYEDPNLNISYPILSIHGNH 127
N + KC E++R+Y GD+PVS+E+LSDQ + F +++VNYEDPNLNI+ P+ SIHGNH
Sbjct: 72 NALHKCIELLRRYTFGDRPVSLEILSDQGQCFHNAVNQSVNYEDPNLNIAIPVFSIHGNH 131
Query: 128 DDPVGQGSVSSLDILSITGLVNYFGKWTDYTHVRISPVLLQKGLTRLALYGLSHLKDQRL 187
DDP G G +SSLD+LS +GLVNYFG+WTD T V ISPVL++KG ++LALYGLSH+ D RL
Sbjct: 132 DDPSGFGRLSSLDLLSTSGLVNYFGRWTDLTQVEISPVLMRKGESQLALYGLSHIHDGRL 191
Query: 188 SRLFAEKKVEMERPD------------ETLDWFNLFVLHQNHADRGHSNYIPEGVLPNFL 235
+RL + KV+ P+ E DWF+L V+HQN ADRG NY+PE +LP+FL
Sbjct: 192 ARLIKDFKVKFNCPENVANGEDGNESKEEEDWFHLLVVHQNRADRGPKNYLPEDLLPSFL 251
Query: 236 DLVVWGHEHDSHICPMKGNKTEKDSFFVVQPGSTVATSLAAGEALPKHCGLLEIHKGNFK 295
LV+WGHEHD C ++ + K F+V QPGS+V TSL+ GEA KH GLLEI+KG FK
Sbjct: 252 HLVIWGHEHD---CRIEPEENAKKRFYVSQPGSSVPTSLSEGEAKKKHVGLLEIYKGKFK 308
Query: 296 LTPLPLQTVRPFIFKTIVLSE--ENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTADL 353
L PLPL+TVRPF+++++VL++ + +G + + + KV +F + RV I+ A T
Sbjct: 309 LKPLPLETVRPFVYESVVLADHADELGLVEGDASTKVFKFAQERVEAMIERAVAQHTGHP 368
Query: 354 RQPLLPLIRLSIFYERESQNFNRIRFGQNFNGLVANPNDLLIMXXXXXXXXXXXXXXXXX 413
+QP LPLIRL + Y ES FN IRFG+ + VAN D++
Sbjct: 369 KQPTLPLIRLRLLYTDESCMFNAIRFGEMLSTRVANVQDVVQFSKVVKRTKTEAVNLDKE 428
Query: 414 GDMTGVAAE-AADVESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFD 472
+ A+ A VE L+ Y+E +K L + + + + + + D
Sbjct: 429 ALRRALEADNATRVEELVDRYFEEAKSNKPLKLFHSKALAEMTYRLLEQRDADAAENIVK 488
Query: 473 AHKRRCIAALLESTAETEKEIAEQLE 498
+K + + L+E+ E I E+LE
Sbjct: 489 FYKEKAVDHLMEAMPNDE-NIDEELE 513
>AE014134-2061|AAF53093.1| 620|Drosophila melanogaster CG16928-PA
protein.
Length = 620
Score = 449 bits (1106), Expect = e-126
Identities = 235/506 (46%), Positives = 320/506 (63%), Gaps = 23/506 (4%)
Query: 12 DDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSV 71
D+ +RIL+A+D HLG+ E D VRGEDSF AFEE+L LAV DVD+ILLGGDLF A PS
Sbjct: 12 DNVIRILVATDNHLGYGEKDAVRGEDSFTAFEEILELAVSEDVDMILLGGDLFHDAVPSQ 71
Query: 72 NCMFKCTEIIRKYCLGDKPVSIELLSDQIKNF----SRTVNYEDPNLNISYPILSIHGNH 127
N + KC E++R+Y GD+PVS+E+LSDQ + F +++VNYEDPNLNI+ P+ SIHGNH
Sbjct: 72 NALHKCIELLRRYTFGDRPVSLEILSDQGQCFHNAVNQSVNYEDPNLNIAIPVFSIHGNH 131
Query: 128 DDPVGQGSVSSLDILSITGLVNYFGKWTDYTHVRISPVLLQKGLTRLALYGLSHLKDQRL 187
DDP G G +SSLD+LS +GLVNYFG+WTD T V ISPVL++KG ++LALYGLSH+ D RL
Sbjct: 132 DDPSGFGRLSSLDLLSTSGLVNYFGRWTDLTQVEISPVLMRKGESQLALYGLSHIHDGRL 191
Query: 188 SRLFAEKKVEMERPD------------ETLDWFNLFVLHQNHADRGHSNYIPEGVLPNFL 235
+RL + KV+ P+ E DWF+L V+HQN ADRG NY+PE +LP+FL
Sbjct: 192 ARLIKDFKVKFNCPENVANGEDGNESKEEEDWFHLLVVHQNRADRGPKNYLPEDLLPSFL 251
Query: 236 DLVVWGHEHDSHICPMKGNKTEKDSFFVVQPGSTVATSLAAGEALPKHCGLLEIHKGNFK 295
LV+WGHEHD C ++ + K F+V QPGS+V TSL+ GEA KH GLLEI+KG FK
Sbjct: 252 HLVIWGHEHD---CRIEPEENAKKRFYVSQPGSSVPTSLSEGEAKKKHVGLLEIYKGKFK 308
Query: 296 LTPLPLQTVRPFIFKTIVLSE--ENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTADL 353
L PLPL+TVRPF+++++VL++ + +G + + + KV +F + RV I+ A T
Sbjct: 309 LKPLPLETVRPFVYESVVLADHADELGLVEGDASTKVFKFAQERVEAMIERAVAQHTGHP 368
Query: 354 RQPLLPLIRLSIFYERESQNFNRIRFGQNFNGLVANPNDLLIMXXXXXXXXXXXXXXXXX 413
+QP LPLIRL + Y ES FN IRFG+ + VAN D++
Sbjct: 369 KQPTLPLIRLRLLYTDESCMFNAIRFGEMLSTRVANVQDVVQFSKVVKRTKTEAVNLDKE 428
Query: 414 GDMTGVAAE-AADVESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFD 472
+ A+ A VE L+ Y+E +K L + + + + + + D
Sbjct: 429 ALRRALEADNATRVEELVDRYFEEAKSNKPLKLFHSKALAEMTYRLLEQRDADAAENIVK 488
Query: 473 AHKRRCIAALLESTAETEKEIAEQLE 498
+K + + L+E+ E I E+LE
Sbjct: 489 FYKEKAVDHLMEAMPNDE-NIDEELE 513
>AE014297-1413|AAF54724.2| 573|Drosophila melanogaster CG12213-PA,
isoform A protein.
Length = 573
Score = 32.7 bits (71), Expect = 1.6
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 414 GDMTGVAAEAADVESLLRAYYEAQ-PKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFD 472
G + + D E L+ ++AQ K K L + + + V+ KH ED AFD
Sbjct: 82 GQLAEALQKQHDTEHALQEKFDAQVEKYKLLEIKYTNLEAEFVKS-KKKHIEDT--NAFD 138
Query: 473 AHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTL 515
++ +A L + A E+E+A E + L + K+H L
Sbjct: 139 QKLQKVLADLHKDKASKEREVAAWKEKLDK-LQRDGEHKIHAL 180
>AE014297-1412|AAN13537.1| 506|Drosophila melanogaster CG12213-PB,
isoform B protein.
Length = 506
Score = 32.7 bits (71), Expect = 1.6
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 414 GDMTGVAAEAADVESLLRAYYEAQ-PKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFD 472
G + + D E L+ ++AQ K K L + + + V+ KH ED AFD
Sbjct: 82 GQLAEALQKQHDTEHALQEKFDAQVEKYKLLEIKYTNLEAEFVKS-KKKHIEDT--NAFD 138
Query: 473 AHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTL 515
++ +A L + A E+E+A E + L + K+H L
Sbjct: 139 QKLQKVLADLHKDKASKEREVAAWKEKLDK-LQRDGEHKIHAL 180
>X53992-1|CAA37939.1| 1645|Drosophila melanogaster betaH spectrin
protein.
Length = 1645
Score = 31.5 bits (68), Expect = 3.6
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 299 LPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTADLRQPLL 358
+P++ ++P L + ++ +NEN E + R+N+ DE ++ A R LL
Sbjct: 930 VPVKRIKPVSVAPKPLVQRRTSTQSINENADSVEKRQQRINQTYDELQEM--AQKRHALL 987
Query: 359 -PLIRLSIFYERESQNFNR 376
I L FY RE +F +
Sbjct: 988 EDSIHLFGFY-RECDDFEK 1005
>BT011336-1|AAR96128.1| 914|Drosophila melanogaster SD02170p
protein.
Length = 914
Score = 31.5 bits (68), Expect = 3.6
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 295 KLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTAD-L 353
KLT LPL+ I + +EN +++ +KV EFLK R + +++T D +
Sbjct: 466 KLTSLPLEAPITKIINLLSQVQENCSADEARLIDKVLEFLK-REGLYSPQMKEIRTDDPI 524
Query: 354 RQPLLP--LIRLSIFYERESQNFNRIRFGQN 382
L+ L S++ R S N + IR G +
Sbjct: 525 ATDLIGALLTGPSVYSSRRSSNDSIIRTGSS 555
>BT001607-1|AAN71362.1| 604|Drosophila melanogaster RE31467p
protein.
Length = 604
Score = 31.5 bits (68), Expect = 3.6
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 295 KLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTAD-L 353
KLT LPL+ I + +EN +++ +KV EFLK R + +++T D +
Sbjct: 456 KLTSLPLEAPITKIINLLSQVQENCSADEARLIDKVLEFLK-REGLYSPQMKEIRTDDPI 514
Query: 354 RQPLLP--LIRLSIFYERESQNFNRIRFGQN 382
L+ L S++ R S N + IR G +
Sbjct: 515 ATDLIGALLTGPSVYSSRRSSNDSIIRTGSS 545
>AE014296-651|AAF47766.1| 4097|Drosophila melanogaster CG12008-PA,
isoform A protein.
Length = 4097
Score = 31.5 bits (68), Expect = 3.6
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 299 LPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTADLRQPLL 358
+P++ ++P L + ++ +NEN E + R+N+ DE ++ A R LL
Sbjct: 917 VPVKRIKPVSVAPKPLVQRRTSTQSINENADSVEKRQQRINQTYDELQEM--AQKRHALL 974
Query: 359 -PLIRLSIFYERESQNFNR 376
I L FY RE +F +
Sbjct: 975 EDSIHLFGFY-RECDDFEK 992
>AE014296-650|AAS64958.1| 4118|Drosophila melanogaster CG12008-PB,
isoform B protein.
Length = 4118
Score = 31.5 bits (68), Expect = 3.6
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 299 LPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTADLRQPLL 358
+P++ ++P L + ++ +NEN E + R+N+ DE ++ A R LL
Sbjct: 917 VPVKRIKPVSVAPKPLVQRRTSTQSINENADSVEKRQQRINQTYDELQEM--AQKRHALL 974
Query: 359 -PLIRLSIFYERESQNFNR 376
I L FY RE +F +
Sbjct: 975 EDSIHLFGFY-RECDDFEK 992
>AE014296-649|AAS64957.1| 4207|Drosophila melanogaster CG12008-PC,
isoform C protein.
Length = 4207
Score = 31.5 bits (68), Expect = 3.6
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 299 LPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTADLRQPLL 358
+P++ ++P L + ++ +NEN E + R+N+ DE ++ A R LL
Sbjct: 917 VPVKRIKPVSVAPKPLVQRRTSTQSINENADSVEKRQQRINQTYDELQEM--AQKRHALL 974
Query: 359 -PLIRLSIFYERESQNFNR 376
I L FY RE +F +
Sbjct: 975 EDSIHLFGFY-RECDDFEK 992
>AE013599-3654|AAM68265.1| 904|Drosophila melanogaster CG5411-PB,
isoform B protein.
Length = 904
Score = 31.5 bits (68), Expect = 3.6
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 295 KLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTAD-L 353
KLT LPL+ I + +EN +++ +KV EFLK R + +++T D +
Sbjct: 456 KLTSLPLEAPITKIINLLSQVQENCSADEARLIDKVLEFLK-REGLYSPQMKEIRTDDPI 514
Query: 354 RQPLLP--LIRLSIFYERESQNFNRIRFGQN 382
L+ L S++ R S N + IR G +
Sbjct: 515 ATDLIGALLTGPSVYSSRRSSNDSIIRTGSS 545
>AE013599-3653|AAM68264.1| 805|Drosophila melanogaster CG5411-PD,
isoform D protein.
Length = 805
Score = 31.5 bits (68), Expect = 3.6
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 295 KLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTAD-L 353
KLT LPL+ I + +EN +++ +KV EFLK R + +++T D +
Sbjct: 357 KLTSLPLEAPITKIINLLSQVQENCSADEARLIDKVLEFLK-REGLYSPQMKEIRTDDPI 415
Query: 354 RQPLLP--LIRLSIFYERESQNFNRIRFGQN 382
L+ L S++ R S N + IR G +
Sbjct: 416 ATDLIGALLTGPSVYSSRRSSNDSIIRTGSS 446
>AE013599-3651|AAM68263.1| 914|Drosophila melanogaster CG5411-PA,
isoform A protein.
Length = 914
Score = 31.5 bits (68), Expect = 3.6
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 295 KLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTAD-L 353
KLT LPL+ I + +EN +++ +KV EFLK R + +++T D +
Sbjct: 466 KLTSLPLEAPITKIINLLSQVQENCSADEARLIDKVLEFLK-REGLYSPQMKEIRTDDPI 524
Query: 354 RQPLLP--LIRLSIFYERESQNFNRIRFGQN 382
L+ L S++ R S N + IR G +
Sbjct: 525 ATDLIGALLTGPSVYSSRRSSNDSIIRTGSS 555
>AM294540-1|CAL26523.1| 431|Drosophila melanogaster CG3975 protein.
Length = 431
Score = 30.7 bits (66), Expect = 6.3
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 245 DSHICPMKGNKTEKDSFFVVQPGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPLPLQTV 304
D P K D+FF QP + +G+ K + + K +P P T
Sbjct: 225 DVKATPSKSTSGTMDNFFKKQPAGAKKSPPESGDKSKKDASNSNKKEASKKKSPSP--TK 282
Query: 305 RPFIFKTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTADLRQ 355
+P T + + +E +E EK+ + L+ +V E+ +++ + K + ++
Sbjct: 283 KPTTANTSMQLFDEESAESSDEEEKL-DMLRRKVIESDNDSDQEKASSSKR 332
>AF201919-1|AAF71697.1| 97|Drosophila melanogaster CRC-D
protein.
Length = 97
Score = 30.7 bits (66), Expect = 6.3
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 35 GEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVNCMFKCT 78
G+D + EEV SL + D ++++ DL D+ + + C+ CT
Sbjct: 54 GDDEALTLEEVASLQLLSDEEMVVEIFDLKDEGRYILVCLLFCT 97
>AE014134-3388|ABC65922.1| 105|Drosophila melanogaster CG8669-PD,
isoform D protein.
Length = 105
Score = 30.7 bits (66), Expect = 6.3
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 35 GEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVNCMFKCT 78
G+D + EEV SL + D ++++ DL D+ + + C+ CT
Sbjct: 62 GDDEALTLEEVASLQLLSDEEMVVEIFDLKDEGRYILVCLLFCT 105
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.318 0.135 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,811,708
Number of Sequences: 52641
Number of extensions: 1136538
Number of successful extensions: 3158
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3146
Number of HSP's gapped (non-prelim): 16
length of query: 628
length of database: 24,830,863
effective HSP length: 89
effective length of query: 539
effective length of database: 20,145,814
effective search space: 10858593746
effective search space used: 10858593746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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