Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001084-TA|BGIBMGA001084-PA|IPR003701|DNA repair
exonuclease, IPR004843|Metallophosphoesterase, IPR007281|Mre11,
DNA-binding
(628 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73978-2|CAA98292.2| 728|Caenorhabditis elegans Hypothetical pr... 307 2e-83
AL032643-4|CAA21662.1| 436|Caenorhabditis elegans Hypothetical ... 31 1.8
Z78064-6|CAB01511.1| 473|Caenorhabditis elegans Hypothetical pr... 31 2.4
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 31 2.4
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 31 2.4
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 31 2.4
U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical pr... 30 4.3
Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical p... 30 5.6
Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical p... 30 5.6
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 30 5.6
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 30 5.6
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 29 7.5
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 29 7.5
U29380-8|AAP68925.1| 334|Caenorhabditis elegans Mediator protei... 29 7.5
Z72511-9|CAA96661.2| 223|Caenorhabditis elegans Hypothetical pr... 29 9.9
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 29 9.9
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 29 9.9
AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical ... 29 9.9
>Z73978-2|CAA98292.2| 728|Caenorhabditis elegans Hypothetical
protein ZC302.1 protein.
Length = 728
Score = 307 bits (753), Expect = 2e-83
Identities = 178/476 (37%), Positives = 272/476 (57%), Gaps = 32/476 (6%)
Query: 12 DDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSV 71
+D ++IL+A+DIH G+ EN D+ FEEVL +A + VD+ILLGGDLF + PS
Sbjct: 63 EDIIKILVATDIHCGYGENKANIHMDAVNTFEEVLQIATEQKVDMILLGGDLFHENNPSR 122
Query: 72 NCMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSRT----VNYEDPNLNISYPILSIHGNH 127
+ T+++R+YCL P+++E LSD NF+++ VNY D NLN+ PI +IHGNH
Sbjct: 123 EVQHRVTQLLRQYCLNGNPIALEFLSDASVNFNQSVFGHVNYYDQNLNVGLPIFTIHGNH 182
Query: 128 DDPVGQGSVSSLDILSITGLVNYFGKWTDYTHVRISPVLLQKGLTRLALYGLSHLKDQRL 187
DD G+G +++LD+L +GLVN FGK ++ +SP+LL+KG TRLALYG+ +D RL
Sbjct: 183 DDLSGKG-LTALDLLHESGLVNLFGKHSNIQEFIVSPILLRKGETRLALYGIGSQRDDRL 241
Query: 188 SRLFAEKKVEMERPDE-TLDWFNLFVLHQNH----ADRGHSNYIPEGVLPNFLDLVVWGH 242
R F + RP+ DWFNLFVLHQN R N++PE ++P F DL++WGH
Sbjct: 242 VRAFKNNSISFLRPNAGAEDWFNLFVLHQNRPRRAMHRSTGNFLPESLIPQFFDLLIWGH 301
Query: 243 EHDSHICP--MKGNKTEKDSFFVVQPGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPLP 300
EH+ P + ++ D F+++QPGSTVATSL EAL K+ L++I F P+P
Sbjct: 302 EHECKPDPQYVASSEAVGDGFYILQPGSTVATSLTPEEALQKNAFLIKIKGRKFASKPIP 361
Query: 301 LQTVRPFIFKTIVLSEENIGSEDVNENEK--------VQEF-LKNRVNEAIDEASKLKTA 351
LQTVRP + ++L + GS + + ++ + E ++ ++NE I A +
Sbjct: 362 LQTVRPMVCDELLLDKIPPGSRPILKTDRPKHTDGRYIDEIAIEAKINEMITTAKAKRRP 421
Query: 352 DLRQPLLPLIRLSIFYERESQNF---NRIRFGQNFNGLVANPNDLLIMXXXXXXXXXXXX 408
RQP LPLIRL + Y+ + N N R G + +VAN D++ +
Sbjct: 422 --RQPELPLIRLKVIYDGDWLNITPANAKRIGLRYENVVANAVDMVFIKKNNKPKEGKLQ 479
Query: 409 XXXXXGDMTGVAAE-----AADVESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFT 459
++T +A E A ++++++ Y+ QP +++VL I A+ ++
Sbjct: 480 TENEK-NITEMADEMGQVSATNLQTIINDYFINQPLVDQMTVLKPIGIGRALEQYS 534
>AL032643-4|CAA21662.1| 436|Caenorhabditis elegans Hypothetical
protein Y54E5A.6 protein.
Length = 436
Score = 31.5 bits (68), Expect = 1.8
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 434 YEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEKEI 493
Y + DK+L + + RV+ +A+ ++ +D++ R K RCI + ++ E +I
Sbjct: 35 YTEEIVDKKL-IEATRVVNEALGTIDYRNGDDIILRLAPEEKGRCILQIGTNSGEKAAKI 93
Query: 494 AE 495
A+
Sbjct: 94 AQ 95
>Z78064-6|CAB01511.1| 473|Caenorhabditis elegans Hypothetical
protein F57B1.2 protein.
Length = 473
Score = 31.1 bits (67), Expect = 2.4
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 453 DAVRDFTLKHNEDVLRRAFDAHKRRCIAAL--LESTAETEKEIAEQLEVCKRELDEADDE 510
D DF H E +L + K +A+ L+ + EI++ L+ K+E+D+A
Sbjct: 174 DKQLDFKTDHLEKLLENVLEHSKGWKESAIEELKQIKLWQAEISDALQQMKKEIDDAKST 233
Query: 511 KLHTLVDASARPSAPAAQL 529
K+ A +AP A L
Sbjct: 234 KIIHSTPEKAPETAPTASL 252
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 31.1 bits (67), Expect = 2.4
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 419 VAAEAADVES-LLRAYYEAQPKDKRLSVLS--VRVITDAVRDFTLKHNEDVLRRAFDAHK 475
VA + A VE+ L RA A+ + ++ L +RV+ + ++ + + + R +
Sbjct: 165 VARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQ 224
Query: 476 RRCIAALLESTAETEKEIAEQ-LEVCKRELDEADDEKLH 513
R +++ L+ AET E AE+ ++ ++E+D +DE +H
Sbjct: 225 IRTVSSRLKE-AETRAEFAERSVQKLQKEVDRLEDELVH 262
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 31.1 bits (67), Expect = 2.4
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 419 VAAEAADVES-LLRAYYEAQPKDKRLSVLS--VRVITDAVRDFTLKHNEDVLRRAFDAHK 475
VA + A VE+ L RA A+ + ++ L +RV+ + ++ + + + R +
Sbjct: 165 VARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQ 224
Query: 476 RRCIAALLESTAETEKEIAEQ-LEVCKRELDEADDEKLH 513
R +++ L+ AET E AE+ ++ ++E+D +DE +H
Sbjct: 225 IRTVSSRLKE-AETRAEFAERSVQKLQKEVDRLEDELVH 262
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 31.1 bits (67), Expect = 2.4
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 419 VAAEAADVES-LLRAYYEAQPKDKRLSVLS--VRVITDAVRDFTLKHNEDVLRRAFDAHK 475
VA + A VE+ L RA A+ + ++ L +RV+ + ++ + + + R +
Sbjct: 165 VARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQ 224
Query: 476 RRCIAALLESTAETEKEIAEQ-LEVCKRELDEADDEKLH 513
R +++ L+ AET E AE+ ++ ++E+D +DE +H
Sbjct: 225 IRTVSSRLKE-AETRAEFAERSVQKLQKEVDRLEDELVH 262
>U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical
protein F47E1.4 protein.
Length = 728
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 307 FIFKTIVLSEENIGSEDVNEN---EKVQEFLKNRVNEAIDEASKLKT 350
++ K I++ +N+ + ++N + + F+ RVN +ID+ K+KT
Sbjct: 178 YLMKGILIEADNLVKNNYSQNSIKQLLSMFIHRRVNRSIDDIQKMKT 224
>Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical
protein F10B5.7 protein.
Length = 1780
Score = 29.9 bits (64), Expect = 5.6
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 324 VNENEKVQEFLKNRVNEAIDEASKLKTADLRQPLLPLIRLSIF 366
+NEN+ +E L NR N AID + K A + PLIR +F
Sbjct: 996 INENQAAEE-LVNRTNLAIDWNAASKRAGFELSVDPLIRDMLF 1037
>Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical
protein F10B5.7 protein.
Length = 1780
Score = 29.9 bits (64), Expect = 5.6
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 324 VNENEKVQEFLKNRVNEAIDEASKLKTADLRQPLLPLIRLSIF 366
+NEN+ +E L NR N AID + K A + PLIR +F
Sbjct: 996 INENQAAEE-LVNRTNLAIDWNAASKRAGFELSVDPLIRDMLF 1037
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 29.9 bits (64), Expect = 5.6
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 421 AEAADVESLLRAYYEAQPKDKRLSVLSVR---VITDAVRDFTLKHNE--DVLRRAFDAHK 475
+++ + E LL+ A K+ + S+R + + ++ +N D L DA +
Sbjct: 480 SKSTETERLLQGEIVALQKEVSIVSESLRKSEAVAEGYKEKVAANNLTLDKLLLHIDASR 539
Query: 476 RRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASA 520
+R IA L S+ E+E +E+LEV + +L A +KL+ + A
Sbjct: 540 KR-IAELELSSKESENRSSEELEVDELQLSNATIKKLNADLSTKA 583
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 29.9 bits (64), Expect = 5.6
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 421 AEAADVESLLRAYYEAQPKDKRLSVLSVR---VITDAVRDFTLKHNE--DVLRRAFDAHK 475
+++ + E LL+ A K+ + S+R + + ++ +N D L DA +
Sbjct: 480 SKSTETERLLQGEIVALQKEVSIVSESLRKSEAVAEGYKEKVAANNLTLDKLLLHIDASR 539
Query: 476 RRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASA 520
+R IA L S+ E+E +E+LEV + +L A +KL+ + A
Sbjct: 540 KR-IAELELSSKESENRSSEELEVDELQLSNATIKKLNADLSTKA 583
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 472 DAHKRRCIAALLESTAETE-KEIAEQLEVCKRELDEADDEK 511
DA R + LES + EI +Q+E K+EL+ ++ EK
Sbjct: 272 DAENERNLKTALESDESSAISEITKQMEAAKKELEASEKEK 312
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 472 DAHKRRCIAALLESTAETE-KEIAEQLEVCKRELDEADDEK 511
DA R + LES + EI +Q+E K+EL+ ++ EK
Sbjct: 272 DAENERNLKTALESDESSAISEITKQMEAAKKELEASEKEK 312
>U29380-8|AAP68925.1| 334|Caenorhabditis elegans Mediator protein 4
protein.
Length = 334
Score = 29.5 bits (63), Expect = 7.5
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 423 AADVESLLRAYYEAQ-PKDKRLSVLSVRVITDAVRDFTLKHN--EDVLRRAFDAHKRRCI 479
A D+E +++ + +DK + + + +T+ ++ F K + + +L+R + +R +
Sbjct: 17 ADDLEHIVKMIVDTLINRDKSVMLKNGETVTNIIKLFDSKQDSIKTLLKRVPEFQEREQL 76
Query: 480 AALLESTAETEKEIAEQLEV----CKRELDEA---DDEKLHTLVDASARP 522
LE+ E E+ +QLE C+ L + ++KL + +A RP
Sbjct: 77 IRTLEAHVEKRDEVIQQLETNLKSCEVALTRSCFHANQKLKQMKEAELRP 126
>Z72511-9|CAA96661.2| 223|Caenorhabditis elegans Hypothetical
protein F55A11.8 protein.
Length = 223
Score = 29.1 bits (62), Expect = 9.9
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 40 IAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVNC 73
+AFEEVL++ +VD + G D+F+ A V+C
Sbjct: 69 VAFEEVLTVQELNEVDAFIYGDDMFEYA--DVHC 100
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 29.1 bits (62), Expect = 9.9
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 429 LLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAE 488
LL A AQ ++ + + R+IT D + +D LRR + +++ +E+ E
Sbjct: 307 LLAAESRAQQAEEDVRDMKERIITSKKDDDSNNLLQDELRRTEEKYQQ--AQKKIENLDE 364
Query: 489 TEKEIAEQLEVCKRELDEA 507
T K+ Q+ R LDEA
Sbjct: 365 TIKQQETQIRDLGRSLDEA 383
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 29.1 bits (62), Expect = 9.9
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 429 LLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAE 488
LL A AQ ++ + + R+IT D + +D LRR + +++ +E+ E
Sbjct: 307 LLAAESRAQQAEEDVRDMKERIITSKKDDDSNNLLQDELRRTEEKYQQ--AQKKIENLDE 364
Query: 489 TEKEIAEQLEVCKRELDEA 507
T K+ Q+ R LDEA
Sbjct: 365 TIKQQETQIRDLGRSLDEA 383
>AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical
protein Y6B3B.3 protein.
Length = 995
Score = 29.1 bits (62), Expect = 9.9
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 296 LTPLPLQTVRPFIFKTIVLSEENIGSEDVNE-NEKVQEFLKN--RVNEAIDEASKLKTAD 352
L L L T+ +I+ S ++ + V N ++EF K+ V A+D+ S ++T +
Sbjct: 26 LKSLNLGTIATIDVDSIIKSLDDGSDKSVAAVNTTLEEFAKSIATVTSALDKTSSMETLE 85
Query: 353 LRQPLLPLIRLSIFYERESQNFNRIRFGQNFNGL 386
+P+ +L +Y+ + + + GL
Sbjct: 86 TLKPITNYAKLFQYYDNSQAIYIKAATDDDIKGL 119
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.135 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,257,128
Number of Sequences: 27539
Number of extensions: 588653
Number of successful extensions: 1761
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1750
Number of HSP's gapped (non-prelim): 26
length of query: 628
length of database: 12,573,161
effective HSP length: 86
effective length of query: 542
effective length of database: 10,204,807
effective search space: 5531005394
effective search space used: 5531005394
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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