GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001083-TA|BGIBMGA001083-PA|IPR002110|Ankyrin,
IPR001594|Zinc finger, DHHC-type
         (622 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    23   8.3  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    23   8.3  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    23   8.3  

>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 329 HFTSNLLFDDELKNIFPLSIY 349
           HFT    FD + K ++  SI+
Sbjct: 42  HFTKRSFFDIQCKGVYDKSIF 62


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 329 HFTSNLLFDDELKNIFPLSIY 349
           HFT    FD + K ++  SI+
Sbjct: 42  HFTKRSFFDIQCKGVYDKSIF 62


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 329 HFTSNLLFDDELKNIFPLSIY 349
           HFT    FD + K ++  SI+
Sbjct: 42  HFTKRSFFDIQCKGVYDKSIF 62


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.138    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,353
Number of Sequences: 317
Number of extensions: 6490
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 622
length of database: 114,650
effective HSP length: 61
effective length of query: 561
effective length of database: 95,313
effective search space: 53470593
effective search space used: 53470593
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 46 (22.6 bits)