GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001082-TA|BGIBMGA001082-PA|IPR005301|Mob1/phocein,
IPR009078|Ferritin/ribonucleotide reductase-like
         (182 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   7.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 120  GRSYAWYDERGKKSRVAA 137
            G S  W+DE  K +++ A
Sbjct: 1141 GPSDTWFDENTKDTKITA 1158


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 74  DLPHGLDYNEWLASHTLALFD 94
           D PH   Y+  L+SH + + D
Sbjct: 201 DNPHAKLYDYDLSSHVITILD 221


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,959
Number of Sequences: 317
Number of extensions: 1953
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 182
length of database: 114,650
effective HSP length: 53
effective length of query: 129
effective length of database: 97,849
effective search space: 12622521
effective search space used: 12622521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)