GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001082-TA|BGIBMGA001082-PA|IPR005301|Mob1/phocein,
IPR009078|Ferritin/ribonucleotide reductase-like
         (182 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...   100   3e-22
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    99   4e-22
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    27   2.2  
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi...    26   3.8  
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    25   8.7  

>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 99.5 bits (237), Expect = 3e-22
 Identities = 45/131 (34%), Positives = 75/131 (57%), Gaps = 2/131 (1%)

Query: 35  SRKARRKEREGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGLDYNEWLASHTLALFD 94
           S K  +  R  +     K Y      E  L    + + V LP G D NEW+A +T+  + 
Sbjct: 5   SNKTAKTFRVRKTEAGTKHYQLRQYAEATLGSGSLMEAVKLPKGEDLNEWIAMNTMDFYT 64

Query: 95  HVNLVYGTVSEFCTAATCPDMTGPGGRSYAWYDER--GKKSRVAAPQYVDYVMTYTQKTV 152
            +N++YGT++EFCTAA+CP M       Y W D++   K +R++AP Y++ ++ +TQ+ +
Sbjct: 65  QINMLYGTITEFCTAASCPQMNAGPSYEYYWQDDKIYTKPTRMSAPDYINNLLDWTQEKL 124

Query: 153 NDETVFPTKYG 163
           +D+ +FPT+ G
Sbjct: 125 DDKKLFPTEIG 135


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 98.7 bits (235), Expect = 4e-22
 Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 3/138 (2%)

Query: 29  SSIDWISRKARRKE--REGEPAGDPK-LYLQEALLERKLPELDMRQLVDLPHGLDYNEWL 85
           SS    S+K+   +  R G P+ +P  LYLQ+  +   L + +   +V LP  +D +EW+
Sbjct: 27  SSSGSFSKKSSTSQLVRTGSPSVEPTALYLQQPFVRTHLVKGNFSTIVSLPRFVDLDEWV 86

Query: 86  ASHTLALFDHVNLVYGTVSEFCTAATCPDMTGPGGRSYAWYDERGKKSRVAAPQYVDYVM 145
           A +   LF ++N  Y   + FCT  TCP M+      Y W D   K   + APQY++YV+
Sbjct: 87  ALNVYELFTYLNHFYDVFATFCTVKTCPVMSAAANFDYTWLDNNRKPVHLPAPQYIEYVL 146

Query: 146 TYTQKTVNDETVFPTKYG 163
            + +  ++D+ VFPTK G
Sbjct: 147 AWIENRLHDQNVFPTKAG 164


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 549

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 24 RTNELSSIDWISRKARRKEREGEPAGDPKLYLQEALLERKL 64
          R +EL +  W+S    R+E+  E A +      E L +RKL
Sbjct: 38 RVHELFTEHWLSNLKNRREKRQELAEEAVYCRSEMLSQRKL 78


>SPBC215.11c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 39  RRKEREGEPAGDPKLYLQEALLERK---LPELDMRQL--VD--LPHGLDYNEWLASHTLA 91
           R    E  P G PK   QE L+  +   + ++D+ QL  +D  +P    ++E  A     
Sbjct: 100 RTGPNEWHPCGAPKFLRQEVLMSMRRLGVKQIDLWQLHRIDPKVPRKDQFSEIAAMKKEG 159

Query: 92  LFDHVNLVYGTVSE 105
           L  HV L   TV +
Sbjct: 160 LIRHVGLSEVTVDD 173


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 12  SLPSYLYSAVPSRTNELSSIDWISRKARR 40
           S PS  YS+ PSR  ++  ID    K +R
Sbjct: 246 SQPSMQYSSHPSRMQQMQDIDQSMYKQQR 274


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 908,766
Number of Sequences: 5004
Number of extensions: 37616
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 5
length of query: 182
length of database: 2,362,478
effective HSP length: 69
effective length of query: 113
effective length of database: 2,017,202
effective search space: 227943826
effective search space used: 227943826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)