Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001082-TA|BGIBMGA001082-PA|IPR005301|Mob1/phocein,
IPR009078|Ferritin/ribonucleotide reductase-like
(182 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0110 + 20910084-20910187,20910255-20910303,20911334-209114... 101 3e-22
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 100 8e-22
03_04_0032 - 16663018-16663026,16663072-16663235,16663384-166635... 99 1e-21
12_01_0794 + 7285100-7285369,7285931-7286338 32 0.24
01_01_1127 + 8930593-8932681,8932812-8933401 30 1.3
05_04_0270 - 19598062-19598694,19598797-19599154,19599247-195994... 29 1.7
03_03_0105 + 14491198-14493636,14494793-14494957,14495647-144957... 29 1.7
10_08_0520 - 18495118-18498237 28 3.8
02_05_0731 + 31299466-31299643,31300369-31300673,31300992-31301660 27 6.7
>03_05_0110 +
20910084-20910187,20910255-20910303,20911334-20911442,
20911597-20911690,20912253-20912386,20912519-20912682,
20912818-20912889
Length = 241
Score = 101 bits (242), Expect = 3e-22
Identities = 49/126 (38%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 41 KEREGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGLDYNEWLASHTLALFDHVNLVY 100
+ ++ P+G L++ + + L ++R+ V LP G D NEWLA +T+ F+ VNL+Y
Sbjct: 41 RPKKSAPSGSKGAQLRKHI-DATLGSGNLREAVRLPPGEDINEWLAVNTVDFFNQVNLLY 99
Query: 101 GTVSEFCTAATCPDMTGPGGRSYAWYD--ERGKKSRVAAPQYVDYVMTYTQKTVNDETVF 158
GT++EFCT +CP MT Y W D + K V+AP+YV+Y+M + + ++DE++F
Sbjct: 100 GTLAEFCTPESCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIEGQLDDESIF 159
Query: 159 PTKYGT 164
P K GT
Sbjct: 160 PQKLGT 165
>10_07_0091 -
12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 100 bits (239), Expect = 8e-22
Identities = 48/126 (38%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 41 KEREGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGLDYNEWLASHTLALFDHVNLVY 100
+ ++ P+G+ + L++ + + L ++R V LP G D NEWLA +T+ F+ VN++Y
Sbjct: 832 RPKKNAPSGNKGVQLKKHI-DATLGSGNLRDAVRLPPGEDLNEWLAVNTVDFFNQVNILY 890
Query: 101 GTVSEFCTAATCPDMTGPGGRSYAWYD--ERGKKSRVAAPQYVDYVMTYTQKTVNDETVF 158
GT+ EFCT TCP M+ Y W D + K V+AP+YV+Y+M + + ++DE++F
Sbjct: 891 GTLMEFCTPTTCPTMSAGPKFEYRWADGIQIKKPIEVSAPKYVEYLMDWIEVQLDDESIF 950
Query: 159 PTKYGT 164
P K GT
Sbjct: 951 PQKLGT 956
>03_04_0032 -
16663018-16663026,16663072-16663235,16663384-16663517,
16664300-16664393,16667458-16667566,16668441-16668489,
16668622-16668647
Length = 194
Score = 99 bits (238), Expect = 1e-21
Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 3/125 (2%)
Query: 41 KEREGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGLDYNEWLASHTLALFDHVNLVY 100
+ ++ P+G L L++ + + L ++R+ V LP G D NEWLA +T+ F+ VN +Y
Sbjct: 15 RPKKSSPSGSKGLPLKKHI-DATLGSGNLREAVRLPIGEDLNEWLAVNTVDFFNQVNFLY 73
Query: 101 GTVSEFCTAATCPDMTGPGGRSYAWYD--ERGKKSRVAAPQYVDYVMTYTQKTVNDETVF 158
GT+ EFCT++TCP M+ Y W D + K +V+AP+YV+Y+M + + ++DE +F
Sbjct: 74 GTLMEFCTSSTCPIMSAGPKYEYRWADGMKVKKPVQVSAPKYVEYLMDWVESQLDDEAIF 133
Query: 159 PTKYG 163
P K G
Sbjct: 134 PQKIG 138
>12_01_0794 + 7285100-7285369,7285931-7286338
Length = 225
Score = 32.3 bits (70), Expect = 0.24
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 7 LGVLFSLPSYLYSAVPSRTNELSSIDWISRKARRKEREGEPAGDPKLYLQEALLERKLPE 66
LG + P ++ S S + S D SRK R+ EP L LQ L LP
Sbjct: 25 LGPTWPAPGFVSSTTKSTKSSSSESDGSSRKKRKHFTWEEPVSHANLELQ---LNDPLP- 80
Query: 67 LDMRQLVDLPHGLDY 81
LD Q +DL G Y
Sbjct: 81 LDWEQCLDLQSGRMY 95
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 32 DWISRKARRKER-EGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGLDYN 82
DW R+AR K+ E A +PK+ Q A L+RKL +L ++ +P DY+
Sbjct: 131 DW--REARLKQEIERYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYS 180
>05_04_0270 -
19598062-19598694,19598797-19599154,19599247-19599491,
19599869-19599877,19599909-19599977,19600043-19600552
Length = 607
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 4 AVVLGVLFSLPSYLYSAVPSRTNELSSIDWISRKARRKEREGEPAGDPK 52
A +LG+L L ++L +AVP L S W+ R+ R+ R G P+
Sbjct: 2 AALLGIL--LVAFLAAAVPFALRLLHSFLWVPRRLERRFRRQGIRGPPR 48
>03_03_0105 + 14491198-14493636,14494793-14494957,14495647-14495760,
14496223-14496487,14497164-14497237,14497851-14497928
Length = 1044
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 44 EGEPAGDPKLYLQEALLER--KLPELDMRQLVDLPHG 78
E P GDP YL LL R K +D +L+D+P G
Sbjct: 971 ENVPEGDPAQYLVAELLCRAAKKNGMDFHELLDIPQG 1007
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 36 RKARRKER-EGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGLDYN 82
R+AR K+ E A +PK+ Q A L+RKL +L ++ +P DY+
Sbjct: 230 REARLKQEIEKYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYS 277
>02_05_0731 + 31299466-31299643,31300369-31300673,31300992-31301660
Length = 383
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 1 MCHAVVLGVLFSLPSYLYSAVPSRTNELSSIDWISR 36
M A+ + F+ SYL S VPS N LS ID SR
Sbjct: 219 MTDAISSTIQFTGSSYLPSTVPSCHNPLSMIDSNSR 254
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,025,813
Number of Sequences: 37544
Number of extensions: 254901
Number of successful extensions: 521
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 9
length of query: 182
length of database: 14,793,348
effective HSP length: 78
effective length of query: 104
effective length of database: 11,864,916
effective search space: 1233951264
effective search space used: 1233951264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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