GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001082-TA|BGIBMGA001082-PA|IPR005301|Mob1/phocein,
IPR009078|Ferritin/ribonucleotide reductase-like
         (182 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   6e-10
SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)               30   0.98 
SB_53725| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_40536| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00014)       29   1.7  
SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_52692| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_33752| Best HMM Match : I-set (HMM E-Value=3.7e-15)                 27   6.9  
SB_52104| Best HMM Match : FRG1 (HMM E-Value=3.3)                      27   9.1  
SB_25802| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_1649| Best HMM Match : ANF_receptor (HMM E-Value=1.2e-05)           27   9.1  

>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 25/52 (48%), Positives = 38/52 (73%), Gaps = 1/52 (1%)

Query: 68  DMRQLVDLPHGLDYNEWLASHTLALFDHVNLVYGTVSEFCTAATCPDMT-GP 118
           ++R  V LP G D NEW+A +T+  F+ +N++YGT++EFCT  +CP M+ GP
Sbjct: 759 NLRLAVMLPEGEDLNEWVAVNTVDFFNQINMLYGTITEFCTLESCPVMSAGP 810


>SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)
          Length = 527

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 115 MTGPGGRSYAWYDERGKKSRVAAPQYVDYVMTYTQKTVNDETVFPTKYGTYLVARTPNVV 174
           +T P   S  +YDE    S + +P  V   +     +VN+   FPTK   Y    +P+ V
Sbjct: 258 LTPPSPSSLQFYDESPLSSPIDSPLPV---INPNSPSVNNVFTFPTKAQEYTPVISPSAV 314

Query: 175 SS 176
           SS
Sbjct: 315 SS 316


>SB_53725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 82  NEWL-ASHTLALFDHVNLVYGTVSEFCTAAT 111
           NEWL  SH   L    NL +GTV E C  AT
Sbjct: 226 NEWLQVSHKQNLKYRFNLDFGTVREICGIAT 256


>SB_40536| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00014)
          Length = 672

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 18  YSAVPSRTNELSSIDWISRKARRKEREGEPAGDPKLYLQEALLERKLPELDMRQLVDL 75
           Y A  S  +  SS   IS +AR + R  E     K   Q+  ++ K  EL++++ + +
Sbjct: 86  YQAEQSHRSSNSSKSAISARARERARAAECITKAKFLKQKKAIQNKFEELELQEEISI 143


>SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 8/87 (9%)

Query: 61  ERKLPELDMRQLVDL-PHGLDYNEWLASHTLALFDHVNL-VYGTVSEFCT-AATCPD--M 115
           +RKL  LD  +  DL P+G  Y E + +H  + + H +    GTV        TCP   +
Sbjct: 546 QRKL--LDEMKAADLRPNGFTYGEMMRTHLFSCYGHAHRHNAGTVQRLVVGVCTCPHLYL 603

Query: 116 TGPGGRSYAWYDERGKKSRVAAP-QYV 141
              G   +   D  G K     P QY+
Sbjct: 604 CLSGQERFGCQDHEGTKRDFFMPMQYL 630


>SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 17  LYSAVPSRTNELSSIDWISRKARRKEREGEPAGDPKLYLQEALLERKL 64
           L+SA P     + S+   +    R E  G PA  P L + + LL  K+
Sbjct: 213 LFSAQPESLGPVVSVPEANAVPARVETGGTPASSPNLRVDQILLRLKM 260


>SB_52692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 19  SAVPS-RTNELSSIDWISR-KARRKEREGEPAGDPKLYLQE--ALLERKLPELDMRQLVD 74
           SA PS R +++    W  + +  R+E +G+ AG PK Y  +  AL+ ++L E   +    
Sbjct: 408 SAAPSSRLHDIKGRIWCQQLEVFREEWDGDRAGPPKRYTNKMGALVHQQLVEHHRKNYPR 467

Query: 75  LP 76
           LP
Sbjct: 468 LP 469


>SB_33752| Best HMM Match : I-set (HMM E-Value=3.7e-15)
          Length = 783

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 27  ELSSIDWISRKARRKEREGEPAGDPKLYLQE 57
           E   ++ I+ +   +E E EP GDP +++ E
Sbjct: 305 EQQDLEDIAEEEEEEEEESEPEGDPPVFVHE 335


>SB_52104| Best HMM Match : FRG1 (HMM E-Value=3.3)
          Length = 275

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 153 NDETVFPTKYGTYLVARTPNV 173
           ND+ +  T YGTYL  R P++
Sbjct: 213 NDKVLVKTVYGTYLSTRDPDI 233


>SB_25802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 102 TVSEFCTAATCPDMTGPGGRSYAWYDERGKKSRV--AAPQYVDYVMTYTQKTVNDETVFP 159
           TVS   T AT P  T     +   YD     S V  A P YV     Y+ +T    + +P
Sbjct: 25  TVSSPTTTATPPYDT----TTTPLYDTTATPSYVTTATPSYVTTAPVYSSETTTAASAYP 80

Query: 160 TKY--GTYLVARTPNVVSSRPP 179
           + Y      ++ T    S+ PP
Sbjct: 81  SSYTAAPVYLSETTTSASAYPP 102


>SB_1649| Best HMM Match : ANF_receptor (HMM E-Value=1.2e-05)
          Length = 481

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 5   VVLGVLFSLPSYLYSAVPSRTN------ELSSIDWISRKARRKEREGEPAGDPKLYLQEA 58
           V+ G L S+P    S +   TN      ELS+   + RK R  +R G P  +   +L ++
Sbjct: 242 VMDGGLCSIPKIAASKIVVNTNSCKFTWELSTYKALDRKKRNNDRSGLPNMNSSYFLYDS 301

Query: 59  LL 60
           +L
Sbjct: 302 VL 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,691,918
Number of Sequences: 59808
Number of extensions: 271896
Number of successful extensions: 800
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 11
length of query: 182
length of database: 16,821,457
effective HSP length: 78
effective length of query: 104
effective length of database: 12,156,433
effective search space: 1264269032
effective search space used: 1264269032
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)