GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001082-TA|BGIBMGA001082-PA|IPR005301|Mob1/phocein,
IPR009078|Ferritin/ribonucleotide reductase-like
         (182 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.58 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   3.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 95  HVNLVYGTVSEFCTAATCPDMTGPGG 120
           +VN +Y + ++F T  T     GPGG
Sbjct: 379 YVNSMYASGAQFATPCTPSPPRGPGG 404


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 60  LERKLPELDMRQLVDLPHGLDYN 82
           L+  LP+LD  +L DL   L  N
Sbjct: 519 LDLSLPQLDSTELADLDISLSEN 541


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 73  VDLPHGLDYNEWLASHTLALF 93
           + + H  D N W+ S+ LA++
Sbjct: 487 IKVDHEYDQNVWVLSNKLAMY 507


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,566
Number of Sequences: 429
Number of extensions: 2694
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 182
length of database: 140,377
effective HSP length: 54
effective length of query: 128
effective length of database: 117,211
effective search space: 15003008
effective search space used: 15003008
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)