GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001081-TA|BGIBMGA001081-PA|IPR003307|eIF4-
gamma/eIF5/eIF2-epsilon
         (60 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   0.24 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       19   2.9  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    19   2.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    19   2.9  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 0.24
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 23  WREDVTDAYPGKGEALFQVNTW 44
           WRE + +AY  K ++L    TW
Sbjct: 261 WREPLPEAYFPKLDSLVASRTW 282



 Score = 18.2 bits (35), Expect = 6.8
 Identities = 6/12 (50%), Positives = 7/12 (58%)

Query: 16  EEEAFLRWREDV 27
           EE     WRED+
Sbjct: 190 EEHRVAYWREDI 201


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 19.4 bits (38), Expect = 2.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 26 DVTDAYPGKGEALFQ 40
          D+   YP  GEA ++
Sbjct: 28 DILSRYPSDGEASYE 42


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 2.9
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 8   YLYNMEVCEEEAFLR-W-REDVTDAYPGK 34
           +LY+ ++      L  W  ED T+ +PG+
Sbjct: 272 HLYDYDLTTHVMLLSDWMHEDATERFPGR 300


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 19.4 bits (38), Expect = 2.9
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 8   YLYNMEVCEEEAFLR-W-REDVTDAYPGK 34
           +LY+ ++      L  W  ED T+ +PG+
Sbjct: 272 HLYDYDLTTHVMLLSDWMHEDATERFPGR 300


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.140    0.503 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,534
Number of Sequences: 317
Number of extensions: 337
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 60
length of database: 114,650
effective HSP length: 40
effective length of query: 20
effective length of database: 101,970
effective search space:  2039400
effective search space used:  2039400
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.9 bits)
S2: 34 (17.8 bits)