GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001081-TA|BGIBMGA001081-PA|IPR003307|eIF4-
gamma/eIF5/eIF2-epsilon
         (60 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    23   3.6  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    23   4.8  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    22   8.4  

>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 6   FMYLYNMEVCEEEAFLRWREDVTDAYPGK 34
           F  L  M+ C EEAF+   +D+   Y GK
Sbjct: 294 FQMLEMMKPCIEEAFVIQDKDIALDYIGK 322


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query: 11  NMEVCEEEAFLRW 23
           N+++C+EE+  RW
Sbjct: 558 NLDLCDEESMRRW 570


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 19 AFLRWREDVTDA 30
          AFL WRE +T A
Sbjct: 8  AFLNWREHITPA 19


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.140    0.503 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,459
Number of Sequences: 5004
Number of extensions: 6330
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 3
length of query: 60
length of database: 2,362,478
effective HSP length: 41
effective length of query: 19
effective length of database: 2,157,314
effective search space: 40988966
effective search space used: 40988966
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)