GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001081-TA|BGIBMGA001081-PA|IPR003307|eIF4-
gamma/eIF5/eIF2-epsilon
         (60 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039...    33   0.029
03_05_0814 + 27907158-27907368,27907981-27908270,27910250-279104...    25   5.8  

>02_05_1184 +
           34802749-34802892,34802981-34803220,34803636-34803950,
           34804030-34804209,34804312-34804504,34805062-34805324,
           34805461-34805590,34805719-34805786,34805951-34806199,
           34806284-34806357,34808052-34808143,34808603-34808685,
           34810337-34810408,34810558-34810683,34810996-34811037
          Length = 756

 Score = 33.1 bits (72), Expect = 0.029
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 8   YLYNMEVCEEEAFLRWREDVTDAYPGKGEALFQVNTWLTWL 48
           YLY+ EV  E+A LRW E+  +A       + Q   ++ WL
Sbjct: 705 YLYDKEVVSEDAILRWAEEKENADESDKVFVKQSEAFIQWL 745


>03_05_0814 +
           27907158-27907368,27907981-27908270,27910250-27910493,
           27910589-27910927,27911036-27911121,27911218-27911325,
           27911471-27911778,27911864-27912127,27912227-27913010
          Length = 877

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 29  DAYPGKGEALFQVNTWL 45
           D  PGKG  +F  N+W+
Sbjct: 135 DGVPGKGTVVFVANSWI 151


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.140    0.503 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,277
Number of Sequences: 37544
Number of extensions: 41937
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 2
length of query: 60
length of database: 14,793,348
effective HSP length: 40
effective length of query: 20
effective length of database: 13,291,588
effective search space: 265831760
effective search space used: 265831760
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)