GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001081-TA|BGIBMGA001081-PA|IPR003307|eIF4-
gamma/eIF5/eIF2-epsilon
         (60 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29)                      85   8e-18
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)                 30   0.23 
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)         26   5.1  

>SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29)
          Length = 770

 Score = 85.0 bits (201), Expect = 8e-18
 Identities = 34/48 (70%), Positives = 43/48 (89%)

Query: 1   MLLRWFMYLYNMEVCEEEAFLRWREDVTDAYPGKGEALFQVNTWLTWL 48
           +LLR FM LY++EV +EEAF++W+EDV + YPGKG+ALFQVNTWLTWL
Sbjct: 710 LLLRMFMLLYDLEVVDEEAFVKWKEDVNEKYPGKGKALFQVNTWLTWL 757


>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
          Length = 1265

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 2    LLRWFMYLYNMEVCEEEAFLRWREDVTDA-YPGKGEALFQVNTWLTWL 48
            L  +F   Y+ ++ +EEAF  W +    A   GKG A      +  WL
Sbjct: 1207 LRSYFEDFYDEDIVQEEAFYAWEKSTDPAEQTGKGTAQASTQRFFEWL 1254


>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
          Length = 1177

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 2   LLRWFMYLYNMEVCEEEAFLRWREDVTDAYPGKGEALFQV 41
           +LR    LYN E+ E+E   +    VT A   K EAL +V
Sbjct: 582 VLRLNDILYNKELAEDEERAQLAAQVTSATREKDEALEEV 621


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.140    0.503 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,848,618
Number of Sequences: 59808
Number of extensions: 47044
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 3
length of query: 60
length of database: 16,821,457
effective HSP length: 39
effective length of query: 21
effective length of database: 14,488,945
effective search space: 304267845
effective search space used: 304267845
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)