GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001081-TA|BGIBMGA001081-PA|IPR003307|eIF4-
gamma/eIF5/eIF2-epsilon
         (60 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-14|AAL16313.1|  402|Caenorhabditis elegans Hypothetical p...    29   0.51 
U64857-13|AAC25859.2|  436|Caenorhabditis elegans Hypothetical p...    29   0.51 
U64857-12|AAN84849.1|  413|Caenorhabditis elegans Hypothetical p...    29   0.51 
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...    27   1.6  
AF003143-2|AAK68267.2|  554|Caenorhabditis elegans Hypothetical ...    25   8.3  

>U64857-14|AAL16313.1|  402|Caenorhabditis elegans Hypothetical
           protein C37C3.2b protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 9   LYNMEVCEEEAFLRWREDVTDAYPGKGEA 37
           LY+ +VCEE++ + W E  +  Y  K  A
Sbjct: 293 LYDEDVCEEDSLISWGEKPSSKYVSKSFA 321


>U64857-13|AAC25859.2|  436|Caenorhabditis elegans Hypothetical
           protein C37C3.2a protein.
          Length = 436

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 9   LYNMEVCEEEAFLRWREDVTDAYPGKGEA 37
           LY+ +VCEE++ + W E  +  Y  K  A
Sbjct: 327 LYDEDVCEEDSLISWGEKPSSKYVSKSFA 355


>U64857-12|AAN84849.1|  413|Caenorhabditis elegans Hypothetical
           protein C37C3.2c protein.
          Length = 413

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 9   LYNMEVCEEEAFLRWREDVTDAYPGKGEA 37
           LY+ +VCEE++ + W E  +  Y  K  A
Sbjct: 327 LYDEDVCEEDSLISWGEKPSSKYVSKSFA 355


>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
           protein Y87G2A.5 protein.
          Length = 1050

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 13  EVCEEEAFLRWREDVTDAYPGKGEALFQVNTW 44
           +V E E  L+W EDV D +   G   F V  W
Sbjct: 552 QVPEAEILLKWDEDVLDTWFSSGMWPFAVFGW 583


>AF003143-2|AAK68267.2|  554|Caenorhabditis elegans Hypothetical
           protein C53H9.2a protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)

Query: 16  EEEAFLRWREDVTD 29
           E EAFL+WR D+++
Sbjct: 139 ENEAFLQWRSDLSE 152


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.140    0.503 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,348,631
Number of Sequences: 27539
Number of extensions: 33533
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 5
length of query: 60
length of database: 12,573,161
effective HSP length: 41
effective length of query: 19
effective length of database: 11,444,062
effective search space: 217437178
effective search space used: 217437178
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)