GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001081-TA|BGIBMGA001081-PA|IPR003307|eIF4-
gamma/eIF5/eIF2-epsilon
         (60 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   0.072
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    19   3.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    18   8.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    18   8.2  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 25.0 bits (52), Expect = 0.072
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 20  FLRWREDVTDAYPGKGEALFQVNTW 44
           F+ W E + +AY  K ++L    TW
Sbjct: 260 FINWHEPIPEAYFPKLDSLVASRTW 284


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
          protein 9 protein.
          Length = 423

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 5  WFMYLYNMEVCEEEAFLRWRE 25
          W++ LY   VC+ +A    R+
Sbjct: 6  WWLILYFSIVCQAKAHYSLRD 26


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 2   LLRWFMYLYNMEVCEEEAFL 21
           L+ W +YL+  +V  ++  L
Sbjct: 421 LMYWIIYLHISDVVADDLVL 440


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 2   LLRWFMYLYNMEVCEEEAFL 21
           L+ W +YL+  +V  ++  L
Sbjct: 421 LMYWIIYLHISDVVADDLVL 440


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.140    0.503 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,159
Number of Sequences: 429
Number of extensions: 421
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 60
length of database: 140,377
effective HSP length: 40
effective length of query: 20
effective length of database: 123,217
effective search space:  2464340
effective search space used:  2464340
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.4 bits)
S2: 35 (18.2 bits)