GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001080-TA|BGIBMGA001080-PA|undefined
         (135 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0745 + 5691926-5692095,5692654-5692735,5693256-5693334,569...    27   6.8  

>07_01_0745 +
           5691926-5692095,5692654-5692735,5693256-5693334,
           5693452-5693543,5693895-5693982,5694099-5694208,
           5694399-5694515,5694883-5695034,5699134-5699229,
           5699308-5699383,5699481-5699534
          Length = 371

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 110 AAPTRTRTVQTLRFNRNYLLFRNWSP 135
           A PT++  V TL+F+R  LLF   +P
Sbjct: 342 ALPTKSTPVYTLQFSRRNLLFAAGAP 367


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,719,267
Number of Sequences: 37544
Number of extensions: 23477
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 1
length of query: 135
length of database: 14,793,348
effective HSP length: 75
effective length of query: 60
effective length of database: 11,977,548
effective search space: 718652880
effective search space used: 718652880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)