GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001080-TA|BGIBMGA001080-PA|undefined
         (135 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5391| Best HMM Match : BTB (HMM E-Value=1.1e-09)                    26   9.3  

>SB_5391| Best HMM Match : BTB (HMM E-Value=1.1e-09)
          Length = 367

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 106 TQVPAAPTRTRTVQTLRFNRNYLLFRNWS 134
           T VP A  +TRT  T +   +Y   R WS
Sbjct: 314 TMVPRAALKTRTCVTTQHTGSYAQNRGWS 342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,231
Number of Sequences: 59808
Number of extensions: 24574
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 1
length of query: 135
length of database: 16,821,457
effective HSP length: 75
effective length of query: 60
effective length of database: 12,335,857
effective search space: 740151420
effective search space used: 740151420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)