Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001079-TA|BGIBMGA001079-PA|IPR003961|Fibronectin, type
III, IPR000242|Tyrosine specific protein phosphatase,
IPR003595|Protein tyrosine phosphatase, catalytic region,
IPR008957|Fibronectin, type III-like fold, IPR000387|Tyrosine specific
protein phosphatase and dual specificity protein phosphatase
         (977 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   5.8  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 15  FRNETTLLVLWQPPYPPGAYTHYKVSIEP 43
           F    T L L  PP PP  YTH+     P
Sbjct: 151 FHAAATSLPLHYPP-PPPVYTHHYARYHP 178


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,153
Number of Sequences: 317
Number of extensions: 9359
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 1
length of query: 977
length of database: 114,650
effective HSP length: 63
effective length of query: 914
effective length of database: 94,679
effective search space: 86536606
effective search space used: 86536606
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)