Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001079-TA|BGIBMGA001079-PA|IPR003961|Fibronectin, type
III, IPR000242|Tyrosine specific protein phosphatase,
IPR003595|Protein tyrosine phosphatase, catalytic region,
IPR008957|Fibronectin, type III-like fold, IPR000387|Tyrosine specific
protein phosphatase and dual specificity protein phosphatase
(977 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379... 120 4e-27
11_01_0514 - 3985204-3985266,3985920-3986061,3986144-3986276,398... 66 1e-10
11_01_0595 + 4732330-4732723,4732839-4732903,4733023-4733143,473... 35 0.36
04_04_1203 - 31703512-31703832,31703922-31704351,31704454-317045... 33 0.84
10_01_0247 + 2594141-2594278,2595091-2595173,2595250-2595451,259... 33 1.5
11_06_0141 + 20559828-20559986,20560074-20560281,20560375-205604... 32 2.6
01_06_0945 + 33217310-33217427,33218820-33219433 31 5.9
12_01_0339 + 2603351-2603891,2604048-2604226 30 7.8
04_04_1544 - 34273909-34274220,34274340-34274769,34274933-342750... 30 7.8
>12_01_0482 -
3791630-3791698,3791983-3792124,3792202-3792344,
3792833-3792958,3794307-3794444,3794540-3794622,
3794738-3794825,3796147-3796344
Length = 328
Score = 120 bits (290), Expect = 4e-27
Identities = 75/217 (34%), Positives = 116/217 (53%), Gaps = 13/217 (5%)
Query: 732 SEGSDYINANYLPGYNSPR--EFIVTQGPLHCTRDDFWRMCWESGSRAVVMLTRCVEKGR 789
+ +DYINA+++ R +FI TQGPL T DDFW M +E +VMLT+
Sbjct: 111 TSSNDYINASFIKVTEDNRVAKFISTQGPLAKTFDDFWEMVYEYQCPVIVMLTQFDSL-- 168
Query: 790 EKCDRYWPYDTRPVYYGDIAVTALNESR--YPDWTVTELLVSRGKEQRV--LLHFHFTTW 845
KCD Y P + YG V N R + W + +++V + RV + H + W
Sbjct: 169 -KCDEYLPLRKQREAYGKYNVKITNAKRDSHQLW-LRDVMVQCNESSRVHSVRHIEYPDW 226
Query: 846 PDFGVPEPPTTLARFVRAFRERCPADGRPVVVHCSAGVGRSGTFITLDTALQQLAARD-D 904
PD GVP T R +R + + P + P+VVHCSAG+GR+G +IT+ + +++L D
Sbjct: 227 PDHGVPTN-TDAVRQIRKWLQNTPME-HPIVVHCSAGIGRTGAYITIHSTIERLLLGDKS 284
Query: 905 YVDIFGMVYNMRRERVAMVQSEQQYICIHQCLVAVLE 941
+ V +R +RV MVQ+E+QY+ ++ + L+
Sbjct: 285 SYHLDETVKTLRTQRVGMVQTEKQYMFCYRAIADELK 321
>11_01_0514 -
3985204-3985266,3985920-3986061,3986144-3986276,
3986703-3986817,3987496-3987549,3987787-3987912,
3989179-3989319,3989470-3989552,3989643-3989733,
3990318-3990405,3992705-3992832
Length = 387
Score = 66.1 bits (154), Expect = 1e-10
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 835 RVLLHFHFTTWPDFGVPEPPTTLARFVRAFRERCPADGRPVVVHCSAGVGRSGTFITLDT 894
R +LH ++ WPD GVP + + ++ P + P+V HCSAG+GR+G +IT+
Sbjct: 277 RHVLHILYSDWPDHGVPHDSAFVRKILKRLYG-IPKE-HPIVAHCSAGIGRTGAYITIHN 334
Query: 895 ALQQLAARD-DYVDIFGMVYNMRRERVAMVQSEQQYI 930
++++ D +D+ V R +R MVQ+E+Q +
Sbjct: 335 TIERILLGDMSALDLSKTVKKFRSQRPGMVQTEEQSV 371
Score = 46.4 bits (105), Expect = 1e-04
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 735 SDYINANYLPGYN---SPREFIVTQGPLHCTRDDFWRMCWESGSRAVVMLTRCVEKGREK 791
++YINA+ + + S +FI TQGPL T DFW+M +E+ +VM+T+ K
Sbjct: 121 NEYINASLIETDDQGQSHTKFISTQGPLVKTFGDFWQMVYENQCPVIVMVTKF---DGAK 177
Query: 792 CDRYWP 797
CDRY P
Sbjct: 178 CDRYLP 183
>11_01_0595 + 4732330-4732723,4732839-4732903,4733023-4733143,
4733596-4733687,4733850-4733915,4734106-4734125,
4734147-4734239,4734358-4734445,4734570-4734635,
4734728-4734843,4735410-4735500,4736133-4736234,
4736342-4736425,4736551-4736643,4736728-4736823,
4736914-4736999,4737528-4737606,4737675-4737788,
4737890-4737985,4738060-4738123,4738221-4738510,
4738901-4738956,4739060-4739177,4739287-4739367,
4739683-4739762,4740001-4740055,4740142-4740211,
4740279-4740468,4740567-4740690,4741055-4741129,
4741217-4741390
Length = 1112
Score = 34.7 bits (76), Expect = 0.36
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 767 WRMCWESGSRAVVMLTRCVEKGREKCDRYWPYDTRPVYYGDIAVT----ALNESRYPDWT 822
+R W+ S + L CV+ +K + + Y+GD + A+ ESRY D
Sbjct: 966 FRGIWKRTSSMMRWLAICVDDASKKGRYTYIVNMLRKYFGDFLIATYLDAVQESRYDDAY 1025
Query: 823 VTELLVSRGKEQRVLLHFHFTTWPDFGVPEPPTTLARFVRAFRERCPAD 871
+ RG E+ +LL T W D V + A VR+F R P +
Sbjct: 1026 I------RGIEREILLKTLDTLWKDHLVNMNKLSSAVNVRSFGHRNPLE 1068
>04_04_1203 -
31703512-31703832,31703922-31704351,31704454-31704551,
31704661-31704763,31704849-31704934,31705022-31705109,
31705194-31705358,31705412-31705500,31705622-31705734,
31707646-31707658
Length = 501
Score = 33.5 bits (73), Expect = 0.84
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 815 ESRYPDWTVTELL-VSRGKEQRVLLHFHFTTWPDFGVPEPPTTLARFVRAFRERCPADGR 873
E R P+W + +S G E +++LHF WP+ ++ F A G
Sbjct: 295 EPRLPEWKEEAIRELSVGVENKIILHFSEVFWPNVEFLGVVSSTTYGCSYFLNLHKATGH 354
Query: 874 PVVVHCSAG 882
PV+V+ AG
Sbjct: 355 PVLVYMPAG 363
>10_01_0247 +
2594141-2594278,2595091-2595173,2595250-2595451,
2595547-2595864
Length = 246
Score = 32.7 bits (71), Expect = 1.5
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 672 FTLGSERCEGGGRAYCNGPLKAGTRYFLKLRAF 704
FTL S RC GGGRA + R+F KL F
Sbjct: 13 FTLSSARCGGGGRAERSSCAALALRWFQKLNLF 45
>11_06_0141 +
20559828-20559986,20560074-20560281,20560375-20560433,
20560532-20560590,20560809-20560886,20560974-20561073,
20561174-20561245,20561327-20561434,20561677-20561730,
20562847-20563296
Length = 448
Score = 31.9 bits (69), Expect = 2.6
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 68 KGLVPGRAYNISVQTVSEPEISAPTTAKYRTVPLRPRNVTAPPDD 112
KG VP + + + V + SA T A R++P++ +V APP+D
Sbjct: 111 KGAVPNGSEKAAGRAVEKKVNSARTPAASRSLPVKSGSVDAPPND 155
>01_06_0945 + 33217310-33217427,33218820-33219433
Length = 243
Score = 30.7 bits (66), Expect = 5.9
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 45 DARDSVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEPEISAPTTAKYRTVPLRPR 104
D S L ++K + P P+ + + R+++ + P S+P+ A+ + PR
Sbjct: 5 DEASSQLSIQKRIDSPLPSVLIVETAMKLRSFSKTASLCRRPSPSSPSGARSSSPGTPPR 64
Query: 105 NVTAPPDDLRETA 117
PP +LR A
Sbjct: 65 GRRPPPSNLRPAA 77
>12_01_0339 + 2603351-2603891,2604048-2604226
Length = 239
Score = 30.3 bits (65), Expect = 7.8
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 846 PDFGVPEPPTTLARFVRAFRERCPADGRPVVVHCSAGVGRSGTFITLDTALQQLAARDDY 905
P + P + F + A G+PV VHC+ G GRS + L L +++
Sbjct: 145 PTWDTRAPTISQIEFAACWACEKRAKGKPVYVHCAFGHGRSACVVC--AVLVALGIAENW 202
Query: 906 VDIFGMVYNMRRERVAMV 923
D ++ R+ ++ V
Sbjct: 203 KDAENIIREKRKIKMNAV 220
>04_04_1544 -
34273909-34274220,34274340-34274769,34274933-34275030,
34275178-34275280,34275386-34275471,34275590-34275677,
34275773-34275886,34275975-34276179,34276530-34276557
Length = 487
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 815 ESRYPDWTVTELL-VSRGKEQRVLLHFHFTTWPDFGVPEPPTTLARFVRAFRERCPADGR 873
E P W + + + G E ++ +HF WP+ V + F A G
Sbjct: 284 EPELPSWKSSAIADLGVGIENKIAMHFDTVFWPNVEVLGMVGPTPKACGYFLNLHKATGN 343
Query: 874 PVVVHCSAG 882
PV+V+ +AG
Sbjct: 344 PVLVYMAAG 352
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,081,504
Number of Sequences: 37544
Number of extensions: 1255394
Number of successful extensions: 2584
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2571
Number of HSP's gapped (non-prelim): 11
length of query: 977
length of database: 14,793,348
effective HSP length: 89
effective length of query: 888
effective length of database: 11,451,932
effective search space: 10169315616
effective search space used: 10169315616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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