GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001079-TA|BGIBMGA001079-PA|IPR003961|Fibronectin, type
III, IPR000242|Tyrosine specific protein phosphatase,
IPR003595|Protein tyrosine phosphatase, catalytic region,
IPR008957|Fibronectin, type III-like fold, IPR000387|Tyrosine specific
protein phosphatase and dual specificity protein phosphatase
         (977 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1) i...   118   3e-26
At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1) i...    76   1e-13
At3g13790.1 68416.m01742 beta-fructosidase (BFRUCT1) / beta-fruc...    31   2.8  
At5g18960.1 68418.m02252 far-red impaired responsive protein, pu...    31   4.9  
At1g74110.1 68414.m08583 cytochrome P450 family protein similar ...    30   6.5  
At3g06250.1 68416.m00718 far-red impaired responsive protein, pu...    30   8.6  

>At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1)
           identical to protein tyrosine phosphatase 1 GI:3170531
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00102 protein-tyrosine phosphatase
          Length = 340

 Score =  118 bits (283), Expect = 3e-26
 Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 13/224 (5%)

Query: 732 SEGSDYINANYLPGYNSPR--EFIVTQGPLHCTRDDFWRMCWESGSRAVVMLTRCVEKGR 789
           S    Y+NA+ +    S    +FI TQGPL  T +DFW M  +     +VMLTR V+  R
Sbjct: 112 SSAKGYVNASLIKTSESESISQFIATQGPLPHTMEDFWEMVIQQHCPIIVMLTRLVDNNR 171

Query: 790 E-KCDRYWPYDTRPVYYGDIAVTALNESRYPDWTV----TELLVSRGKEQRV-LLHFHFT 843
             KC  Y+  +  P  +G+I++T     +  D ++     E+     ++Q + +LH  + 
Sbjct: 172 TVKCGDYFQDEDGPREFGNISLTT-KWIKTTDTSLMLRNLEVNYKETEDQPMSVLHIQYP 230

Query: 844 TWPDFGVPEPPTTLARFVRAFRERCPADGRPVVVHCSAGVGRSGTFITLDTALQQLAARD 903
            WPD GVP+    +   ++   +  P+ G P++VHCSAG+GR+GT+  +   +Q++ A D
Sbjct: 231 EWPDHGVPKDTVAVREILKRLYQVPPSLG-PIIVHCSAGIGRTGTYCAIHNTIQRILAGD 289

Query: 904 -DYVDIFGMVYNMRRERVAMVQSEQQYICIHQCLVAVLEGQDLT 946
              +D+   V   R++R+ MVQ+  QY   +  +V  LE  DLT
Sbjct: 290 MSALDLAKTVALFRKQRIGMVQTMDQYFFCYNAIVDELE--DLT 331


>At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1)
           identical to protein tyrosine phosphatase 1 GI:3170531
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00102 protein-tyrosine phosphatase
          Length = 277

 Score = 76.2 bits (179), Expect = 1e-13
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 10/156 (6%)

Query: 732 SEGSDYINANYLPGYNSPR--EFIVTQGPLHCTRDDFWRMCWESGSRAVVMLTRCVEKGR 789
           S    Y+NA+ +    S    +FI TQGPL  T +DFW M  +     +VMLTR V+  R
Sbjct: 112 SSAKGYVNASLIKTSESESISQFIATQGPLPHTMEDFWEMVIQQHCPIIVMLTRLVDNNR 171

Query: 790 E-KCDRYWPYDTRPVYYGDIAVTALNESRYPDWTV----TELLVSRGKEQRV-LLHFHFT 843
             KC  Y+  +  P  +G+I++T     +  D ++     E+     ++Q + +LH  + 
Sbjct: 172 TVKCGDYFQDEDGPREFGNISLTT-KWIKTTDTSLMLRNLEVNYKETEDQPMSVLHIQYP 230

Query: 844 TWPDFGVPEPPTTLARFVRAFRERCPADGRPVVVHC 879
            WPD GVP+    +   ++   +  P+ G P++VHC
Sbjct: 231 EWPDHGVPKDTVAVREILKRLYQVPPSLG-PIIVHC 265


>At3g13790.1 68416.m01742 beta-fructosidase (BFRUCT1) /
           beta-fructofuranosidase / cell wall invertase identical
           to beta-fructofuranosidase GI:402740 from [Arabidopsis
           thaliana]
          Length = 584

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 11/109 (10%)

Query: 12  IVWFRNETTLLVLWQPPYPPGAYTHYKVSIEPPDARDSVLYVEKEGEPPGPAQAAFKGLV 71
           IVW  + +T L+ W  P+PP  +      I    +  + +       P G     + G+ 
Sbjct: 93  IVWAHSTSTDLINWD-PHPPAIFPSAPFDINGCWSGSATIL------PNGKPVILYTGID 145

Query: 72  PGRAYNISVQTVSEPE-ISAPTTAKYRTVPLRPRNVTAPPDDLRETAFR 119
           P    N  VQ ++EP+ +S P   +++  PL P       + +  ++FR
Sbjct: 146 P---KNQQVQNIAEPKNLSDPYLREWKKSPLNPLMAPDAVNGINASSFR 191


>At5g18960.1 68418.m02252 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 788

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 642 SWRDVHALPVWPPYQVTEPYYPFLSSPVEEFTLGSERCEGGGRAYC 687
           S +D+ AL VW   +    Y  F +S +E++ L  E    GG+  C
Sbjct: 740 SAQDLKALMVWSLREAASKYIEFGTSSLEKYKLAYEIMREGGKKLC 785


>At1g74110.1 68414.m08583 cytochrome P450 family protein similar to
           Cytochrome P450 78A4 (SP:O65012) Cytochrome P450 78A4
           [Pinus radiata]; similar to cytochrome P-450 GB:AAB37231
           from [Phalaenopsis sp. SM9108]
          Length = 537

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 313 RYVLRYRARVPEPGPPAEWRQLRTEDTSALLADLFPGAVYEIELAAMSHD--LPSEAHRM 370
           R +++   R+  PGP   W +L   DT      +  G    + + A++HD  +  EAH  
Sbjct: 392 RAIVKETLRMHPPGPLLSWARLSIHDTQIGTHFIPAGTTAMVNMWAITHDEKVWPEAHE- 450

Query: 371 LKPVRPLAA 379
            KP R L A
Sbjct: 451 YKPERFLGA 459


>At3g06250.1 68416.m00718 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 764

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 644 RDVHALPVWPPYQVTEPYYPFLSSPVEEFTLGSERCEGGGRAYC 687
           +D+ AL +W   +    Y  F +S +E++ L  E    GG+  C
Sbjct: 718 QDLKALMIWSLREAASKYIEFGTSSLEKYKLAYEIMREGGKKLC 761


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,950,103
Number of Sequences: 28952
Number of extensions: 902585
Number of successful extensions: 1627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1619
Number of HSP's gapped (non-prelim): 6
length of query: 977
length of database: 12,070,560
effective HSP length: 88
effective length of query: 889
effective length of database: 9,522,784
effective search space: 8465754976
effective search space used: 8465754976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)