Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001078-TA|BGIBMGA001078-PA|undefined
         (158 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    25   5.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   5.4  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   7.1  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    24   9.4  

>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 9   DLVIEIPGSGAGEDGDSVSGLYRLDYRPPEGTPAPNH 45
           DL++  PG     DG  V G   +D     G P P H
Sbjct: 339 DLILVKPGEIIPVDGTVVEGSSYVDESSVSGEPVPVH 375


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 30  YRLDYRPPEGTPAPN------HTVPARASTINFQGLPGTKYHFMLYYSNSTFPDLL 79
           +R  Y PP+   + N      +TV +  S   ++ LP    +   Y + S+FP+ L
Sbjct: 69  HRFSYSPPQHPASINSRRVASYTVQSSPSRTTYRQLPNEPQNSAAYTTYSSFPNAL 124


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 74  TFPDLLTWNQTIITGRDCSGRVAAQVIPLTERAEGGQRN 112
           T P LL     +   R  SG+ AA VIP+ E  +    N
Sbjct: 99  TIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLAN 137


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 40  TPAPNHTVPARASTINFQGLPGTKYHFMLYYSNSTFPDL 78
           +P+P   +P   S+   Q     + H +LY ++ + P L
Sbjct: 198 SPSPQEALPLMPSSPPSQDYQNDQNHLILYTNSESIPKL 236


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 761,744
Number of Sequences: 5004
Number of extensions: 31287
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 4
length of query: 158
length of database: 2,362,478
effective HSP length: 67
effective length of query: 91
effective length of database: 2,027,210
effective search space: 184476110
effective search space used: 184476110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)