BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001078-TA|BGIBMGA001078-PA|undefined (158 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18) 31 0.44 SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078) 28 4.1 SB_30626| Best HMM Match : Kelch_1 (HMM E-Value=1e-17) 27 5.4 SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_14436| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 >SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18) Length = 1086 Score = 31.1 bits (67), Expect = 0.44 Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 12/125 (9%) Query: 37 PEGTPAPNHTVPARASTINFQGLPGTKYHFMLYYSNSTFPDLLTWNQTIITGRDCSGRVA 96 P+ TPA + T A+ N G +YH +Y SN P LLT + I G V Sbjct: 746 PKNTPAASVTSHYEAAVRNMMANGGGEYH--MYPSN--MPSLLTPSGVAIPGYPSHEAVD 801 Query: 97 AQVIPLTERAEGGQRNITVERGNDTHVLRDLFPGAT---YQLHAFTLLHDK--ESAAYAS 151 +++ +R I RG ++R + GA H++ LLH + E A A+ Sbjct: 802 YRMLQYVYPGSALRREI---RGGIRTMVRSVPHGANAAGRTPHSYQLLHGRSLEHGAMAA 858 Query: 152 RNFTT 156 R+ + Sbjct: 859 RSMAS 863 >SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1039 Score = 29.1 bits (62), Expect = 1.8 Identities = 11/18 (61%), Positives = 11/18 (61%) Query: 33 DYRPPEGTPAPNHTVPAR 50 DYRPP G P P VP R Sbjct: 293 DYRPPPGPPKPTFPVPPR 310 >SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078) Length = 539 Score = 27.9 bits (59), Expect = 4.1 Identities = 16/52 (30%), Positives = 23/52 (44%) Query: 13 EIPGSGAGEDGDSVSGLYRLDYRPPEGTPAPNHTVPARASTINFQGLPGTKY 64 ++P SG GE + +SG + P E P H+ P+ A LP Y Sbjct: 211 DVPDSGEGEVYEDLSGQGGILDEPMEEMPGGYHSRPSYAIYDTPSNLPAANY 262 >SB_30626| Best HMM Match : Kelch_1 (HMM E-Value=1e-17) Length = 341 Score = 27.5 bits (58), Expect = 5.4 Identities = 12/44 (27%), Positives = 20/44 (45%) Query: 27 SGLYRLDYRPPEGTPAPNHTVPARASTINFQGLPGTKYHFMLYY 70 SG + LD+ + AP H T N + G+K H++ + Sbjct: 166 SGAFMLDFETGKYREAPFHAASRSGHTANLVYIRGSKKHYVFVF 209 >SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4072 Score = 27.1 bits (57), Expect = 7.1 Identities = 13/29 (44%), Positives = 13/29 (44%) Query: 35 RPPEGTPAPNHTVPARASTINFQGLPGTK 63 R P G P P TV T F GL G K Sbjct: 3404 RGPPGPPGPASTVAGPVGTRGFPGLKGEK 3432 >SB_14436| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 765 Score = 27.1 bits (57), Expect = 7.1 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 93 GRVAAQVIPLTERAEGGQRNITV-ERGNDTHVLRDLFPGATYQLHAFTLLHDKESAAYAS 151 G ++ I T++A +N T+ + GN + L D G TY ++ + D + +S Sbjct: 338 GFASSHDISTTDQATLIIKNATLSDAGNYSVELTDADDGTTYIMNVVVNVQDSTRISNSS 397 Query: 152 RNFTTS 157 RN TT+ Sbjct: 398 RNKTTN 403 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.135 0.411 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,908,494 Number of Sequences: 59808 Number of extensions: 251335 Number of successful extensions: 461 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 456 Number of HSP's gapped (non-prelim): 7 length of query: 158 length of database: 16,821,457 effective HSP length: 77 effective length of query: 81 effective length of database: 12,216,241 effective search space: 989515521 effective search space used: 989515521 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 56 (26.6 bits)
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