Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001078-TA|BGIBMGA001078-PA|undefined
(158 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0238 + 28597399-28598286 30 0.76
05_03_0006 + 7315060-7316292 29 1.7
09_03_0167 + 12965030-12965356,12966100-12966387,12966704-129668... 29 2.3
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 28 3.0
01_01_0927 + 7332980-7333186,7334511-7335269,7336287-7336442,733... 28 3.0
09_04_0635 - 19143721-19145165,19145255-19145306 28 4.0
12_01_0346 + 2652181-2653566 27 7.0
12_01_0052 + 433203-433292,433409-433815,434435-434447,437081-43... 27 9.3
07_03_1106 + 24017601-24019955 27 9.3
>05_07_0238 + 28597399-28598286
Length = 295
Score = 30.3 bits (65), Expect = 0.76
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 1 MTRCGSCADLVIEIPGSGAGEDGDSVSGLYRLDYRPPEGTPAPNHTVPARASTINF 56
+T CG + G G GE D+ +RL+ PP T P RAS ++
Sbjct: 239 VTTCGEETSPYVVGGGGGGGEVADAAYLAWRLNVVPPAATATAFSVWPERASLYHY 294
>05_03_0006 + 7315060-7316292
Length = 410
Score = 29.1 bits (62), Expect = 1.7
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 5 GSCADLVIEIPGSGAGEDGDSVSG-LYRLDYRPPEGTPAPN-HTVPARASTINFQGLPGT 62
G+ A + + PG+ AG+D S G L Y P E + + T AS NF
Sbjct: 279 GASATIRRDDPGAAAGDDAASSDGELVECAYPPSEASVVWSVVTADGVASAGNFSSAASG 338
Query: 63 KYHFMLYYS 71
YH Y++
Sbjct: 339 YYHHYYYHN 347
>09_03_0167 +
12965030-12965356,12966100-12966387,12966704-12966826,
12967229-12967611,12967863-12968190,12968324-12968353,
12968837-12968989,12969510-12969815
Length = 645
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 76 PDLLTWNQTIITGRDCSGRVAAQVIPLTERAEGGQRNITVERGNDTHV 123
P +LT N I+ SG+ ++PL E+ ++I+ E GN V
Sbjct: 114 PHVLTTNDVIVAAETGSGKTHGYLVPLIEKL--CSKSISAEDGNSQDV 159
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 77 DLLTWNQTIITGRDCSGRVAAQVIPLTERAEGGQRNITVE 116
DLL+ N +I + SG+V A++ ER EG N+ E
Sbjct: 1647 DLLSRNDDLIKKIEDSGQVVAELQAALERIEGKAANLEAE 1686
>01_01_0927 +
7332980-7333186,7334511-7335269,7336287-7336442,
7336615-7337538,7338905-7339201
Length = 780
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 93 GRVAAQVIPLTERAEGGQ--RNITVERGNDTHVLRDLFPGATYQLHAFTLLHDKES 146
G A + T GG +++ DT DLF G T + A LHD S
Sbjct: 443 GEPIADISTTTSNGNGGDPFADVSFHETADTKDTNDLFSGMTVEEKATAALHDSSS 498
>09_04_0635 - 19143721-19145165,19145255-19145306
Length = 498
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 39 GTPA-PNHTVPARASTINFQGL---PGTKYHFMLYYSNST 74
GTPA P +P ++ + L PGT+ H+ LYY+N T
Sbjct: 315 GTPARPGAKMPVFVFSLYNEDLKPGPGTERHWGLYYANGT 354
>12_01_0346 + 2652181-2653566
Length = 461
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 61 GTKYHFMLYYSNSTFPDLLTWNQTIITGRDCSGRVAAQVIPLTERAEGG 109
GT +L Y N+ F + + + + G D R+A + L +R GG
Sbjct: 242 GTSAATVLTYDNAVFEAVASRHDAHLGGDDFDARIAGRFSQLIKRDHGG 290
>12_01_0052 +
433203-433292,433409-433815,434435-434447,437081-437473
Length = 300
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 35 RPPEGTPAPNHTVPAR------ASTINFQGLPGTKYHFMLYYS 71
RP +GT P H P R T + Q +PGTK + + Y S
Sbjct: 142 RPRDGTSYPFHVQPTRELAPILLGTNSMQPVPGTKVYKLKYGS 184
>07_03_1106 + 24017601-24019955
Length = 784
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 76 PDLLTWNQTIITGRDCSGRVAAQVIPLTERAEGG 109
PD++T+ T+I+G D +G++ A ++ E G
Sbjct: 346 PDVVTYT-TLISGLDRAGKIDAAIVEYDEMVRNG 378
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,451,052
Number of Sequences: 37544
Number of extensions: 250132
Number of successful extensions: 586
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 9
length of query: 158
length of database: 14,793,348
effective HSP length: 76
effective length of query: 82
effective length of database: 11,940,004
effective search space: 979080328
effective search space used: 979080328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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