GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001078-TA|BGIBMGA001078-PA|undefined
         (158 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)                    31   0.44 
SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078)              28   4.1  
SB_30626| Best HMM Match : Kelch_1 (HMM E-Value=1e-17)                 27   5.4  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_14436| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
          Length = 1086

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 12/125 (9%)

Query: 37  PEGTPAPNHTVPARASTINFQGLPGTKYHFMLYYSNSTFPDLLTWNQTIITGRDCSGRVA 96
           P+ TPA + T    A+  N     G +YH  +Y SN   P LLT +   I G      V 
Sbjct: 746 PKNTPAASVTSHYEAAVRNMMANGGGEYH--MYPSN--MPSLLTPSGVAIPGYPSHEAVD 801

Query: 97  AQVIPLTERAEGGQRNITVERGNDTHVLRDLFPGAT---YQLHAFTLLHDK--ESAAYAS 151
            +++         +R I   RG    ++R +  GA       H++ LLH +  E  A A+
Sbjct: 802 YRMLQYVYPGSALRREI---RGGIRTMVRSVPHGANAAGRTPHSYQLLHGRSLEHGAMAA 858

Query: 152 RNFTT 156
           R+  +
Sbjct: 859 RSMAS 863


>SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/18 (61%), Positives = 11/18 (61%)

Query: 33  DYRPPEGTPAPNHTVPAR 50
           DYRPP G P P   VP R
Sbjct: 293 DYRPPPGPPKPTFPVPPR 310


>SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078)
          Length = 539

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)

Query: 13  EIPGSGAGEDGDSVSGLYRLDYRPPEGTPAPNHTVPARASTINFQGLPGTKY 64
           ++P SG GE  + +SG   +   P E  P   H+ P+ A       LP   Y
Sbjct: 211 DVPDSGEGEVYEDLSGQGGILDEPMEEMPGGYHSRPSYAIYDTPSNLPAANY 262


>SB_30626| Best HMM Match : Kelch_1 (HMM E-Value=1e-17)
          Length = 341

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 27  SGLYRLDYRPPEGTPAPNHTVPARASTINFQGLPGTKYHFMLYY 70
           SG + LD+   +   AP H       T N   + G+K H++  +
Sbjct: 166 SGAFMLDFETGKYREAPFHAASRSGHTANLVYIRGSKKHYVFVF 209


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/29 (44%), Positives = 13/29 (44%)

Query: 35   RPPEGTPAPNHTVPARASTINFQGLPGTK 63
            R P G P P  TV     T  F GL G K
Sbjct: 3404 RGPPGPPGPASTVAGPVGTRGFPGLKGEK 3432


>SB_14436| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 93  GRVAAQVIPLTERAEGGQRNITV-ERGNDTHVLRDLFPGATYQLHAFTLLHDKESAAYAS 151
           G  ++  I  T++A    +N T+ + GN +  L D   G TY ++    + D    + +S
Sbjct: 338 GFASSHDISTTDQATLIIKNATLSDAGNYSVELTDADDGTTYIMNVVVNVQDSTRISNSS 397

Query: 152 RNFTTS 157
           RN TT+
Sbjct: 398 RNKTTN 403


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,908,494
Number of Sequences: 59808
Number of extensions: 251335
Number of successful extensions: 461
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 7
length of query: 158
length of database: 16,821,457
effective HSP length: 77
effective length of query: 81
effective length of database: 12,216,241
effective search space: 989515521
effective search space used: 989515521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)