GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001078-TA|BGIBMGA001078-PA|undefined
         (158 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79697-1|CAB01975.2|  119|Caenorhabditis elegans Hypothetical pr...    32   0.22 
AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical ...    28   3.5  
AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p...    27   4.7  
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p...    27   4.7  
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p...    27   4.7  
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr...    27   4.7  
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.     27   4.7  
Z96100-6|CAB76719.1|  222|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AL110480-2|CAB60326.1|  244|Caenorhabditis elegans Hypothetical ...    27   8.2  
AL033124-1|CAB76736.1|  222|Caenorhabditis elegans Hypothetical ...    27   8.2  
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    27   8.2  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    27   8.2  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    27   8.2  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    27   8.2  

>Z79697-1|CAB01975.2|  119|Caenorhabditis elegans Hypothetical
          protein F58H10.1 protein.
          Length = 119

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 18 GAGEDGDSVSGLYR-LDYRPPEGTPAPNH 45
          G G+DG +V  +Y  +  +PPEGTP  +H
Sbjct: 33 GDGDDGVAVDAVYEVISDKPPEGTPTKHH 61


>AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical
           protein C02E11.1b protein.
          Length = 1123

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 89  RDCSGRVAAQVI--PLTERAEGGQRNITVERGNDTHVLRDLFPGATYQLHAFTLLHDKES 146
           R+ SG     VI   L+E  +  Q   T +  + T+ +R L P   YQ+HA +      +
Sbjct: 886 REMSGDAMKDVIIEALSEGCDLHQSEATTKE-DGTYRIRGLLPDCEYQVHAKSYADGSPA 944

Query: 147 AAYASRNFTTS 157
                R+FT S
Sbjct: 945 PHSFPRSFTVS 955


>AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical
           protein C02E11.1a protein.
          Length = 1121

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 89  RDCSGRVAAQVI--PLTERAEGGQRNITVERGNDTHVLRDLFPGATYQLHAFTLLHDKES 146
           R+ SG     VI   L+E  +  Q   T +  + T+ +R L P   YQ+HA +      +
Sbjct: 884 REMSGDAMKDVIIEALSEGCDLHQSEATTKE-DGTYRIRGLLPDCEYQVHAKSYADGSPA 942

Query: 147 AAYASRNFTTS 157
                R+FT S
Sbjct: 943 PHSFPRSFTVS 953


>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
            protein ZK617.1c protein.
          Length = 6629

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 19   AGEDGDSVSGLYRLDYRPPEGTPAPNHTVPARASTINFQGL-PGTKYHF 66
            A + G  + G Y ++ R P G   P  TV A   T    GL PG  Y F
Sbjct: 2958 ADDGGAPIEG-YLVEMRTPSGDWVPAVTVGAGELTATVDGLKPGQTYQF 3005


>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
            protein ZK617.1b protein.
          Length = 7158

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 19   AGEDGDSVSGLYRLDYRPPEGTPAPNHTVPARASTINFQGL-PGTKYHF 66
            A + G  + G Y ++ R P G   P  TV A   T    GL PG  Y F
Sbjct: 3487 ADDGGAPIEG-YLVEMRTPSGDWVPAVTVGAGELTATVDGLKPGQTYQF 3534


>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
            protein ZK617.1a protein.
          Length = 6839

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 19   AGEDGDSVSGLYRLDYRPPEGTPAPNHTVPARASTINFQGL-PGTKYHF 66
            A + G  + G Y ++ R P G   P  TV A   T    GL PG  Y F
Sbjct: 3168 ADDGGAPIEG-YLVEMRTPSGDWVPAVTVGAGELTATVDGLKPGQTYQF 3215


>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
            ZK617.1c protein.
          Length = 6629

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 19   AGEDGDSVSGLYRLDYRPPEGTPAPNHTVPARASTINFQGL-PGTKYHF 66
            A + G  + G Y ++ R P G   P  TV A   T    GL PG  Y F
Sbjct: 2958 ADDGGAPIEG-YLVEMRTPSGDWVPAVTVGAGELTATVDGLKPGQTYQF 3005


>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
            ZK617.1b protein.
          Length = 7158

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 19   AGEDGDSVSGLYRLDYRPPEGTPAPNHTVPARASTINFQGL-PGTKYHF 66
            A + G  + G Y ++ R P G   P  TV A   T    GL PG  Y F
Sbjct: 3487 ADDGGAPIEG-YLVEMRTPSGDWVPAVTVGAGELTATVDGLKPGQTYQF 3534


>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
            ZK617.1a protein.
          Length = 6839

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 19   AGEDGDSVSGLYRLDYRPPEGTPAPNHTVPARASTINFQGL-PGTKYHF 66
            A + G  + G Y ++ R P G   P  TV A   T    GL PG  Y F
Sbjct: 3168 ADDGGAPIEG-YLVEMRTPSGDWVPAVTVGAGELTATVDGLKPGQTYQF 3215


>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
          Length = 6048

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 19   AGEDGDSVSGLYRLDYRPPEGTPAPNHTVPARASTINFQGL-PGTKYHF 66
            A + G  + G Y ++ R P G   P  TV A   T    GL PG  Y F
Sbjct: 2377 ADDGGAPIEG-YLVEMRTPSGDWVPAVTVGAGELTATVDGLKPGQTYQF 2424


>Z96100-6|CAB76719.1|  222|Caenorhabditis elegans Hypothetical
           protein VH15N14R.1 protein.
          Length = 222

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 108 GGQRNITVERGNDTHVLRDLFPGATY 133
           GGQR + +ERG    VL   FPGA +
Sbjct: 60  GGQRGLLMERGRADRVL-FYFPGANF 84


>AL110480-2|CAB60326.1|  244|Caenorhabditis elegans Hypothetical
           protein Y24F12A.3 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 108 GGQRNITVERGNDTHVLRDLFPGATY 133
           GGQR + +ERG    VL   FPGA +
Sbjct: 60  GGQRGLLMERGRADRVL-FYFPGANF 84


>AL033124-1|CAB76736.1|  222|Caenorhabditis elegans Hypothetical
           protein VH15N14R.1 protein.
          Length = 222

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 108 GGQRNITVERGNDTHVLRDLFPGATY 133
           GGQR + +ERG    VL   FPGA +
Sbjct: 60  GGQRGLLMERGRADRVL-FYFPGANF 84


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 41   PAPNHTVPARASTINFQGL-PGTKYHFMLYY-SNSTFPDLL 79
            P+ N+TVP   ++I F+GL P T Y+  +   +NS +  +L
Sbjct: 3512 PSKNYTVPYPGNSIKFEGLRPETIYNITVQAGTNSGYGHIL 3552


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 41   PAPNHTVPARASTINFQGL-PGTKYHFMLYY-SNSTFPDLL 79
            P+ N+TVP   ++I F+GL P T Y+  +   +NS +  +L
Sbjct: 3512 PSKNYTVPYPGNSIKFEGLRPETIYNITVQAGTNSGYGHIL 3552


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 41   PAPNHTVPARASTINFQGL-PGTKYHFMLYY-SNSTFPDLL 79
            P+ N+TVP   ++I F+GL P T Y+  +   +NS +  +L
Sbjct: 3512 PSKNYTVPYPGNSIKFEGLRPETIYNITVQAGTNSGYGHIL 3552


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 41   PAPNHTVPARASTINFQGL-PGTKYHFMLYY-SNSTFPDLL 79
            P+ N+TVP   ++I F+GL P T Y+  +   +NS +  +L
Sbjct: 3512 PSKNYTVPYPGNSIKFEGLRPETIYNITVQAGTNSGYGHIL 3552


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,276,457
Number of Sequences: 27539
Number of extensions: 186767
Number of successful extensions: 384
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 28
length of query: 158
length of database: 12,573,161
effective HSP length: 76
effective length of query: 82
effective length of database: 10,480,197
effective search space: 859376154
effective search space used: 859376154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)