Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001078-TA|BGIBMGA001078-PA|undefined
(158 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11700.1 68418.m01367 glycine-rich protein predicted protein,... 31 0.48
At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containi... 31 0.48
At3g25730.1 68416.m03204 AP2 domain-containing transcription fac... 30 0.63
At3g07320.1 68416.m00873 glycosyl hydrolase family 17 protein si... 30 0.84
At4g27110.1 68417.m03896 phytochelatin synthetase-related contai... 28 3.4
At3g19230.1 68416.m02440 leucine-rich repeat family protein cont... 27 4.5
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ... 27 5.9
At1g65860.1 68414.m07473 flavin-containing monooxygenase family ... 27 5.9
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 27 7.8
At4g15240.1 68417.m02336 fringe-related protein + weak similarit... 27 7.8
At2g34260.2 68415.m04192 transducin family protein / WD-40 repea... 27 7.8
At2g34260.1 68415.m04191 transducin family protein / WD-40 repea... 27 7.8
>At5g11700.1 68418.m01367 glycine-rich protein predicted protein,
Arabidopsis thaliana
Length = 1411
Score = 30.7 bits (66), Expect = 0.48
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 16 GSGAGEDGDSVSGLYRLDYRPPEGTPAPNH 45
GS + D DS S L+ DY PP P P H
Sbjct: 36 GSDSDLDSDSESLLFHQDYSPPAPPPPPPH 65
>At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 1052
Score = 30.7 bits (66), Expect = 0.48
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 59 LPGTKYHFMLYYSNSTFPDLLTWNQTIITGRDCSGRV 95
L KY F L S FPD++T+N T+ITG S RV
Sbjct: 834 LGDAKYMFDLMVSKGCFPDVVTYN-TLITGFCKSKRV 869
>At3g25730.1 68416.m03204 AP2 domain-containing transcription
factor, putative contains Pfam profile: PF00847 AP2
domain; similar to RAV1 (DNA-binding protein)
GB:BAA34250 [Arabidopsis thaliana] (Nucleic Acids Res.
27 (2), 470-478 (1999))
Length = 333
Score = 30.3 bits (65), Expect = 0.63
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 41 PAPNHTVPARASTINFQGLPGTKYHFMLYYSNSTFPDLLT--WNQTIITGRDCSG 93
P N+ V + +NF+ + G + F Y NS+ +LT W++ + R C+G
Sbjct: 212 PLGNNNVSVKGMLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAG 266
>At3g07320.1 68416.m00873 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase from GI:6714534 [Salix
gilgiana]
Length = 460
Score = 29.9 bits (64), Expect = 0.84
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 36 PPEGTPA-PNHTVPARASTI---NFQGLPGTKYHFMLYYSNST 74
PP GTPA P +PA + N + PGT+ HF L + N T
Sbjct: 298 PPVGTPARPGKVLPAFVFALYNENQKTGPGTERHFGLLHPNGT 340
>At4g27110.1 68417.m03896 phytochelatin synthetase-related contains
Pfam PF04833: Phytochelatin synthetase-like conserved
region
Length = 668
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 47 VPARASTINFQGLPGTKYHFMLYYSNSTFP 76
VP + TI FQGLPG Y ++ +N T P
Sbjct: 556 VPPKNQTIFFQGLPGMNY--LIGITNGTNP 583
>At3g19230.1 68416.m02440 leucine-rich repeat family protein
contains Pfam profile:PF00560 LRR:Leucine Rich Repeat
domains; similar to light repressible receptor protein
kinase (GI:1321686)[Arabidopsis thaliana]
Length = 519
Score = 27.5 bits (58), Expect = 4.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 59 LPGTKYHFMLYYSNSTFPDLLTW 81
LP TKY+ LY+ ++ P ++W
Sbjct: 265 LPATKYYVALYFQDNRSPGPMSW 287
>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 714
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 86 ITGRDCSGRVAAQVIPLTERAEGGQRNITVERGNDTHVLRDL 127
+TG D + +V LT + ++T+E ND +L D+
Sbjct: 663 VTGEDEVSSLNGEVSSLTIEEDNEVSSLTIEEDNDADILSDI 704
>At1g65860.1 68414.m07473 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenase FMO3 (dimethylaniline
monoxygenase (N-oxide forming) 3) GI:349533 [SP|P32417]
from Oryctolagus cuniculus, [SP|P97501] from Mus
musculus; contains Pfam profile PF00743 Flavin-binding
monooxygenase-like domain
Length = 459
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 47 VPARASTINFQGLPGTKYHFMLYYSNSTFPDLLTWNQTIITGRD 90
+PA A +++F GLPG F+++ S + + + I+ +D
Sbjct: 315 LPALAPSLSFIGLPGMAIQFVMFEIQSKWVAAVLSGRVILPSQD 358
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 57 QGLPGTKYHFMLYYSNSTFPDLLTWNQTIITGRDCSGRVAAQVIPLTER 105
+GL KY M ++ P L + R SG+ A VIP+ E+
Sbjct: 84 RGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132
>At4g15240.1 68417.m02336 fringe-related protein + weak similarity
to Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 488
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 64 YHFMLYYSNSTFPDLLTWNQTIITGRDCSG 93
Y +Y N PDLLT +T T R SG
Sbjct: 350 YAVQVYEGNKLLPDLLTLQKTFSTWRRGSG 379
>At2g34260.2 68415.m04192 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 296
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 17 SGAGEDGDSVSGLYRLDYRPPEGTPAPNHTVPARASTIN 55
SGA ED DS + LD P + + ++A+T+N
Sbjct: 249 SGAAEDSDSDNDGMDLDNDPSKSSKGSKRKTKSKANTLN 287
>At2g34260.1 68415.m04191 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 353
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 17 SGAGEDGDSVSGLYRLDYRPPEGTPAPNHTVPARASTIN 55
SGA ED DS + LD P + + ++A+T+N
Sbjct: 306 SGAAEDSDSDNDGMDLDNDPSKSSKGSKRKTKSKANTLN 344
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.135 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,080,042
Number of Sequences: 28952
Number of extensions: 172603
Number of successful extensions: 329
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 12
length of query: 158
length of database: 12,070,560
effective HSP length: 75
effective length of query: 83
effective length of database: 9,899,160
effective search space: 821630280
effective search space used: 821630280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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