Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001077-TA|BGIBMGA001077-PA|IPR001159|Double-stranded RNA
binding
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    34   0.031
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    28   1.5  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    27   4.7  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    27   4.7  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.2  

>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 16/67 (23%), Positives = 34/67 (50%)

Query: 130  VADTGPAHMRLFSVRASIGLHSRDASGTTKRQARQKAAADLYLNKHERAMERLVETTPAP 189
            V +T P   +  + +A +G ++ +AS   +  + +  +A L     ++ ++R   + P P
Sbjct: 1719 VTETKPVTSKPTASKADVGQNATEASSAKREPSGKSLSARLQGTGKQKGVQRPAVSRPVP 1778

Query: 190  WKPDLGQ 196
             KPD G+
Sbjct: 1779 MKPDSGK 1785


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 194 LGQRVSEYHYGLISHTGECTARSRRRLPVVLDQCLRRA 231
           LG++  + HY +I+     TA SRRRL +    CL+ A
Sbjct: 466 LGEQKEDVHYSIITDLQNGTADSRRRLAI---YCLKDA 500


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 53  KREAK-QEAARAMLLCLSTIGHRVPPPFATEFTQPSHSNQSAGECSEGKAPTVDSRSYVA 111
           K+E+K Q    +  + LST   +   P  T     + S+    EC   K P   S + ++
Sbjct: 613 KQESKPQLTGNSRQIDLSTFVKQANTPNITSLLDGTCSSPPNNECFNDKEPDSSSSTLIS 672

Query: 112 LLKELCEEYKLPGVE 126
             +EL  EY+ P  E
Sbjct: 673 DRQEL--EYRNPNAE 685


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 20  EYECVAQSGPQHQATFEFRCKALGESVSASARSKREAKQEAARAMLLCLSTIGHRVPPPF 79
           +YE + +  P  Q T  F    +G+ V    R+K+    + ++A  +  + +G   P P 
Sbjct: 113 KYELIKK--PDGQFTL-FTVNTVGKEVQRKLRTKQ---LDLSKAESIISAVLGEEKPDPS 166

Query: 80  ATEFTQPSHSNQSAGECSEGKAPTVDSRSYVALLK 114
           +     P  +  +    SEGK     S     +LK
Sbjct: 167 SKVSNIPEENRDATSAISEGKETESVSLEETGVLK 201


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 90  NQSAGECSEGKAPTVDSRSYVALLKELCEEYKLPGV 125
           + S G       P+  +  Y ++LKELC  Y LP +
Sbjct: 85  SSSLGSHDSSSLPSSTNNRYSSVLKELCNTY-LPSI 119


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.129    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,237,181
Number of Sequences: 5004
Number of extensions: 42804
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 6
length of query: 320
length of database: 2,362,478
effective HSP length: 73
effective length of query: 247
effective length of database: 1,997,186
effective search space: 493304942
effective search space used: 493304942
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)