Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001077-TA|BGIBMGA001077-PA|IPR001159|Double-stranded RNA
binding
         (320 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    40   3e-05
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.2  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 39.9 bits (89), Expect = 3e-05
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 28/184 (15%)

Query: 2   KTPITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSASARSKREAKQEAA 61
           K  +  L E+  K G +  Y+ V Q+GP H   F    +  G++     R+K+ AK  AA
Sbjct: 35  KNAVCALNEL--KSGAV--YKVVDQTGPTHAPIFTIAVQIDGQTYEGKGRTKKMAKHAAA 90

Query: 62  RAML-------------LCLSTIGHRVP--PPFATEFTQPSHSNQSAGECSEGKAPTVD- 105
              L               ++T    +P  P F ++ T+  +   +A +    +    + 
Sbjct: 91  ELALRNIVQFRNTPEVHQAINTCQPSIPLEPDFTSDVTERDNHLVNAFKTLTQEPKNTNK 150

Query: 106 --SRSYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSVRASIGLHSRDASGTTKRQAR 163
              +  VAL+ EL      PGV Y  V+D G ++ + F++  +I   + + +G +K+ A+
Sbjct: 151 FLEKGPVALINEL-----YPGVVYKCVSDNGESYAK-FTISVTIDGETFEGTGPSKKLAK 204

Query: 164 QKAA 167
             A+
Sbjct: 205 AAAS 208



 Score = 35.9 bits (79), Expect = 5e-04
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 124 GVEYALVADTGPAHMRLFSVRASIGLHSRDASGTTKRQARQKAAADLYL 172
           G  Y +V  TGP H  +F++   I   + +  G TK+ A+  AAA+L L
Sbjct: 47  GAVYKVVDQTGPTHAPIFTIAVQIDGQTYEGKGRTKKMAKH-AAAELAL 94



 Score = 28.7 bits (61), Expect = 0.071
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 2   KTPITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSASARSKREAKQEAA 61
           K P+ ++ E+    G +  Y+CV+ +G  + A F       GE+   +  SK+ AK  A+
Sbjct: 154 KGPVALINELYP--GVV--YKCVSDNGESY-AKFTISVTIDGETFEGTGPSKKLAKAAAS 208

Query: 62  RAMLLCLSTI 71
           +A L  L  +
Sbjct: 209 KAALAKLRNV 218


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 183 VETTPAPWKPDLGQRVSEYHYGLI 206
           VE   A W+ D+G  +  +H+ L+
Sbjct: 192 VEHRVAYWREDIGINLHHWHWHLV 215


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.129    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,165
Number of Sequences: 429
Number of extensions: 3046
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 320
length of database: 140,377
effective HSP length: 58
effective length of query: 262
effective length of database: 115,495
effective search space: 30259690
effective search space used: 30259690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)