Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001077-TA|BGIBMGA001077-PA|IPR001159|Double-stranded RNA
binding
(320 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850... 33 0.40
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 31 1.6
05_03_0242 + 10823312-10823342,10823662-10823732,10824010-108240... 30 2.2
03_03_0035 + 13977150-13979228,13979351-13979824 30 2.2
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493... 30 2.8
03_01_0167 + 1374578-1375243,1375895-1376277,1377947-1378007,137... 30 2.8
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 29 5.0
06_01_0097 - 810283-810296,810398-810521,810974-811066,811144-81... 29 6.6
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 28 8.7
08_01_0336 - 2993322-2993711 28 8.7
07_03_1083 - 23840789-23841634,23841991-23842017,23844401-238444... 28 8.7
>11_02_0119 -
8502455-8503015,8503311-8504009,8504512-8504571,
8504744-8504800
Length = 458
Score = 32.7 bits (71), Expect = 0.40
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 17 QIPEYECVAQSGPQHQATFEFRC-KALGESVSASARSKREA 56
++ E E +Q P+ T RC K+ G+ VSA AR+KR+A
Sbjct: 292 RVEELESSSQPSPRPMETTRRRCCKSTGKKVSAGARAKRKA 332
>04_04_0468 - 25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 19 PEYECVAQSGPQHQATFEFRC--------KALGESVSASARSKREAKQEAARAMLLCLST 70
PE++ + GP H F ++ L E S K+ A++ AA+ L CL
Sbjct: 1486 PEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKKAAQEHAAQGALWCLKQ 1545
Query: 71 IGH 73
+GH
Sbjct: 1546 LGH 1548
>05_03_0242 +
10823312-10823342,10823662-10823732,10824010-10824021,
10827329-10827394,10827564-10827766,10827977-10828266,
10828377-10828468,10829876-10830344,10830670-10830978,
10831290-10831364,10831457-10831614
Length = 591
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 44 ESVSASARSKREAKQEAARAMLLCLSTIGHRVPPPF----ATEFTQPSHSNQSAGECSEG 99
ES+ AR+K EAK + + A + + GH VP P FT P + + C
Sbjct: 313 ESMERLARAKVEAKSKGSEACMELVEADGHPVPGPVWHAAVRVFTYPHYCS-----CFM- 366
Query: 100 KAPTVDSRSYVALL 113
K PT ++RS L+
Sbjct: 367 KLPTAEARSVYILM 380
>03_03_0035 + 13977150-13979228,13979351-13979824
Length = 850
Score = 30.3 bits (65), Expect = 2.2
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 93 AGE-CSEGKAPTVDSRSYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSVRASIGLHS 151
AGE C G +D RSYV L + E++ P + T P MR F V+ +I L +
Sbjct: 726 AGELCGAG----IDERSYVERLASILREHRYPDI-------TVP-RMRRFVVQQAIWLMT 773
Query: 152 RDASGTTKRQARQKAAADLYLNKHERAMERLVET 185
++ A A AD E MERL+E+
Sbjct: 774 SSSAAA----ASAAAGADYVSLLREAGMERLLES 803
>05_05_0070 +
22148595-22148907,22148988-22149104,22149196-22149350,
22149987-22150061,22150179-22150469,22150942-22151292,
22151390-22151794
Length = 568
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 68 LSTIGHRVPPPFATEFTQPSHS-NQSAGECSEGKAPTVDSRSY 109
+ST G PPP+AT + PS S Q + + G+A VD RS+
Sbjct: 502 VSTSG--TPPPYATAYATPSFSPAQLSSPSNIGRALLVDRRSH 542
>03_01_0167 +
1374578-1375243,1375895-1376277,1377947-1378007,
1378721-1379386
Length = 591
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 139 RLFSVRASIGLHSRDASGTTKRQARQKAAADLYLNKHERAMERLVETTPAPWKPDLG 195
+L + R ++G A+GTT+ Q + D + +H ++++ + PW+P G
Sbjct: 275 QLQAARKALGEKDVSAAGTTRGQTPRLRVIDQCI-RHHKSLQGVAAMDSHPWRPQRG 330
>05_01_0054 +
379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 1 MKTPITVLQEMMMKLGQIPEYECV-AQSGPQHQATFEFRCKALGESVSASARSKREAKQE 59
+K I +++E+ + + +P+ E V A + Q T EF C+ L S S+ + E
Sbjct: 639 LKKQIDIVEELDLGMSCVPDGEYVLAPTNYSRQQTTEFSCQELVPSNSSILPEQSETNGV 698
Query: 60 AARAMLLCLS 69
+ + C S
Sbjct: 699 GLKGTIDCFS 708
>06_01_0097 -
810283-810296,810398-810521,810974-811066,811144-811236,
811410-811514,811661-811732,811857-811934,812210-812379,
812507-812741,812832-813074,813243-813338,813445-813582,
814014-814139,814235-814453
Length = 601
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 129 LVADTGPAHMRLFSVRASIGLHSRDASGTTKRQARQKAAADLYLNKHERAMERL 182
+V+D P+ + S S+ R+A K R KAA +LY NK A+++L
Sbjct: 20 IVSDKKPSSLSSVS-SVSVASRPRNARLQRKCNFRVKAAKELYFNKDGSAIKKL 72
>12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 7 VLQEMMMKLGQ-IPEYECVAQSGPQHQATFEFRCKALG-ESVSASARSKREAKQEAARAM 64
+LQE K+ IP Y C + A F + G + + A+AR+K++A+ +AAR
Sbjct: 1623 LLQEYAQKMNYAIPSYICTKSASGL--APFICTVEIGGIQYIGAAARTKKDAEIKAARTA 1680
Query: 65 LLCL 68
LL +
Sbjct: 1681 LLAI 1684
>08_01_0336 - 2993322-2993711
Length = 129
Score = 28.3 bits (60), Expect = 8.7
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 47 SASARSKREAKQEAARAMLLCLSTIGHRVPPPFATEFTQPSHSN--QSAGECSEGKAPTV 104
SAS +R A E+ + + S G R+P E + P N AG PT
Sbjct: 42 SASKAVRRPASVESDQPEEVTASRRGERLPDWLVLELSSPQEENPISRAGGVLPRVLPT- 100
Query: 105 DSRSYVALLKELCEEYKLPGVE 126
R V L+++L +LP +E
Sbjct: 101 -PRKLVRLVRQLHRSEELPELE 121
>07_03_1083 -
23840789-23841634,23841991-23842017,23844401-23844442,
23844882-23845002,23845824-23846062
Length = 424
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 76 PPPFATEFTQPSHSNQSAGECSEGK 100
PPP A EF P+ + EC GK
Sbjct: 60 PPPAAEEFAMPAALRNAVRECGTGK 84
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.129 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,807,002
Number of Sequences: 37544
Number of extensions: 332753
Number of successful extensions: 899
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 13
length of query: 320
length of database: 14,793,348
effective HSP length: 82
effective length of query: 238
effective length of database: 11,714,740
effective search space: 2788108120
effective search space used: 2788108120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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