Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001077-TA|BGIBMGA001077-PA|IPR001159|Double-stranded RNA
binding
(320 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U67949-5|AAB07566.1| 705|Caenorhabditis elegans Hypothetical pr... 36 0.038
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr... 32 0.47
Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical pr... 29 4.4
U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone... 29 4.4
AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein. 29 4.4
AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein. 29 4.4
Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical pr... 28 7.7
>U67949-5|AAB07566.1| 705|Caenorhabditis elegans Hypothetical
protein F55A4.5 protein.
Length = 705
Score = 35.9 bits (79), Expect = 0.038
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 16/182 (8%)
Query: 2 KTPITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKAL--GESVSASARSKREAKQE 59
K+ I+ + E +L +E + + GP H + RC + G V A A K + K+
Sbjct: 291 KSVISDIHEKAYQLKVNVVFEVLKEEGPPHDRQYVVRCAFVTSGNVVKAEAVGKGKKKKS 350
Query: 60 AAR-AMLLCLSTIGHRVPP--PFATEFTQPSHSNQSAGECSEGKAPTV--DSR------- 107
A + A L+T+ H P P A + A E K T+ D +
Sbjct: 351 AQQEACTQLLATVEHLTPENNPVALATNVCKTQKKLAAMNREPKRKTIVKDKKMDPLYGH 410
Query: 108 --SYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSVRASIGLHSRDASGTTKRQARQK 165
+ V+ L ++ + + LVA+ G + + F ++ G ++ G KR A++
Sbjct: 411 QINPVSRLIQVTQAKSKEHPTFELVAEHGVSKYKEFIIQVKYGDDVQEGKGPNKRLAKRA 470
Query: 166 AA 167
AA
Sbjct: 471 AA 472
Score = 32.3 bits (70), Expect = 0.47
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 7 VLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSASARSKREAKQEAARAMLL 66
++Q K + P +E VA+ G F + K + +KR AK+ AA AML
Sbjct: 418 LIQVTQAKSKEHPTFELVAEHGVSKYKEFIIQVKYGDDVQEGKGPNKRLAKRAAAEAMLE 477
Query: 67 CLSTIGHRVPPPFATEFTQPSHSNQSAGECSE--GKAPTVDSRS 108
+ + +PPP + + + S E S G PT S S
Sbjct: 478 SIGFV-KPLPPPGKSLLKKMIDCDPSLPEISHWTGPPPTAVSVS 520
Score = 31.9 bits (69), Expect = 0.62
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 107 RSYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSVRASI-GLHSRDASGTTKRQARQK 165
+S + + E+ KL V Y L ++GPAH +LF+V+ + + + SGT+ ++A+Q
Sbjct: 77 KSAMCRVAEIARFNKLRHV-YNLQDESGPAHKKLFTVKLVLTEAETFEGSGTSIKRAQQA 135
Query: 166 AA 167
+A
Sbjct: 136 SA 137
>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical
protein F40F11.2 protein.
Length = 1593
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 159 KRQARQKAAADLYLNKHERAMERLVETTPAPWKPDLGQRVSEYHY 203
KRQ RQK D+ +++ R +E V+ TP K D+ +R+ YH+
Sbjct: 656 KRQIRQKRLKDIMIDQLNR-LEEPVDVTPFRNKMDVLERLLPYHH 699
>Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical
protein F44A6.2 protein.
Length = 534
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 195 GQRVSEYHYGLISHTGECTARSRRRLPVVLD-QCLRRAMVDTDPEKR 240
G + S YHYG+ S G C RR + +D +CL++ + + E R
Sbjct: 155 GDKASGYHYGVTSCEG-CKGFFRRSIQRKIDYRCLKQQVCEIKRESR 200
>U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone
receptor familymember CNR14 protein.
Length = 534
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 195 GQRVSEYHYGLISHTGECTARSRRRLPVVLD-QCLRRAMVDTDPEKR 240
G + S YHYG+ S G C RR + +D +CL++ + + E R
Sbjct: 155 GDKASGYHYGVTSCEG-CKGFFRRSIQRKIDYRCLKQQVCEIKRESR 200
>AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein.
Length = 553
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 195 GQRVSEYHYGLISHTGECTARSRRRLPVVLD-QCLRRAMVDTDPEKR 240
G + S YHYG+ S G C RR + +D +CL++ + + E R
Sbjct: 152 GDKASGYHYGVTSCEG-CKGFFRRSIQRKIDYRCLKQQVCEIKRESR 197
>AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein.
Length = 556
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 195 GQRVSEYHYGLISHTGECTARSRRRLPVVLD-QCLRRAMVDTDPEKR 240
G + S YHYG+ S G C RR + +D +CL++ + + E R
Sbjct: 155 GDKASGYHYGVTSCEG-CKGFFRRSIQRKIDYRCLKQQVCEIKRESR 200
>Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical
protein K07G5.1 protein.
Length = 998
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 49 SARSKREAKQEAARAMLLCLSTIGHRVPPPFATEFTQPSHSNQSAGECSE 98
SA S+R + AR +C GHR P + T + S+++ G+ +E
Sbjct: 754 SATSRRAEQLATARLAEVCTEQAGHR-PRSIIGDLTSSTTSSETVGDSTE 802
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.129 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,011,491
Number of Sequences: 27539
Number of extensions: 249640
Number of successful extensions: 602
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 598
Number of HSP's gapped (non-prelim): 9
length of query: 320
length of database: 12,573,161
effective HSP length: 81
effective length of query: 239
effective length of database: 10,342,502
effective search space: 2471857978
effective search space used: 2471857978
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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