Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001076-TA|BGIBMGA001076-PA|IPR002110|Ankyrin,
IPR013093|ATPase AAA-2
(326 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 68 2e-12
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 64 3e-11
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 33 0.055
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 29 1.2
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 29 1.2
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 28 1.6
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 28 2.1
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 27 2.7
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 27 4.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 6.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 8.4
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 67.7 bits (158), Expect = 2e-12
Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 193 LERRLKQYIVGQRAAIHTVAAAVRRKENGWADDDHPLV-FLFLGSSGIGKTELAKQLARY 251
+E+ L + ++GQ A+ VA A+R G +D + P+ FLF G SG GKT L K LA +
Sbjct: 578 MEKVLSKQVIGQNEAVTAVANAIRLSRAGLSDPNQPIASFLFCGPSGTGKTLLTKALASF 637
Query: 252 MHKDDPAAFIRLDMSEY 268
M DD A IR+DMSEY
Sbjct: 638 MF-DDENAMIRIDMSEY 653
Score = 37.9 bits (84), Expect = 0.002
Identities = 13/27 (48%), Positives = 23/27 (85%)
Query: 270 GRLTDGKGKLIECKDAIFVMTSNLAAD 296
GR+T G+G++++ K+A+ +MTSNL A+
Sbjct: 713 GRITSGQGQVVDAKNAVIIMTSNLGAE 739
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 232 LFLGSSGIGKTELAKQLARYMHKDDPAA 259
+ +G G+GKT +A+ LAR + DD A
Sbjct: 206 VLIGEPGVGKTSIAEGLARRIIDDDVPA 233
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 64.1 bits (149), Expect = 3e-11
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 193 LERRLKQYIVGQRAAIHTVAAAVRRKENGWADDDHPLV-FLFLGSSGIGKTELAKQLARY 251
+E+ + + I+GQ A+ +A AVR G + + PL FLFLG +G+GKT L K LA +
Sbjct: 496 MEQTIGKKIIGQDEALKAIADAVRLSRAGLQNTNRPLASFLFLGPTGVGKTALTKALAEF 555
Query: 252 MHKDDPAAFIRLDMSEYQGRLT 273
+ D A IR DMSE+Q + T
Sbjct: 556 LF-DTDKAMIRFDMSEFQEKHT 576
Score = 31.9 bits (69), Expect = 0.13
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 269 QGRLTDGKGKLIECKDAIFVMTSNLAAD 296
+G LTD +G+ ++ + + VMTSNL +D
Sbjct: 630 EGFLTDSQGRKVDFRSTLIVMTSNLGSD 657
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 33.1 bits (72), Expect = 0.055
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 40 GGPVDRRHPLGWTALMVAAANDKPDVVRELIKLGAKPDL 78
G V++R LG+T L A+ D D+ L+ GAKPD+
Sbjct: 885 GCDVNKRDALGYTPLHYASLYDHKDICVNLLSNGAKPDV 923
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 228 PLVFLFLGSSGIGKTELAKQLARYMH-KDDPAAFIRLD 264
P + +G +G GKT +QL ++H K+ P + LD
Sbjct: 8 PCAIIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLD 45
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 52 TALMVAAANDKPDVVRELIKLGAKPDLQE 80
TAL A ++P+ V+ L+KLGA P ++
Sbjct: 369 TALHTAVRYNRPECVKMLLKLGANPSARD 397
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 1.6
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 228 PLVFLFLGSSGIGKTELAKQLARYMHKDDPAAFIRLDMSEYQGRLTD-GKGKLIECKDAI 286
P L G G GKT LAK LA K A FI + + G LTD G+ + DA+
Sbjct: 125 PKGLLLYGPPGCGKTMLAKALA----KQSQATFINVSV----GLLTDKWFGESNKLVDAL 176
Query: 287 FVMTSNL 293
F + L
Sbjct: 177 FTLARKL 183
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 235 GSSGIGKTELAKQLARYMHKDDPAAFIRLDMSEYQGRLTDGKGKL 279
G+S +L +QLA Y HK+ A F+ + QG L GKG +
Sbjct: 716 GTSNARLAQLLRQLASYYHKESNALFM---VRIAQGLLYLGKGTM 757
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 227 HPLVFLFLGSSGIGKTELAKQLARYMHKDDPAAFIRLD 264
H L + LG SG+GKT + Q D A I D
Sbjct: 7 HLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGAD 44
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 14/66 (21%)
Query: 9 RAAQIGNVEELKRQAEYLIAKESQQPKKDDEGGPVDRRHPLGWTALMVAAANDKPDVVRE 68
RAA +G ++ +K YLI++ + P++ G+T L A A PDV E
Sbjct: 147 RAAAVGKIQVVK----YLISQRA----------PLNTSDSYGFTPLHFALAEGHPDVGVE 192
Query: 69 LIKLGA 74
L++ GA
Sbjct: 193 LVRAGA 198
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 13 IGNVEELKRQAEYLIAKES-QQPKKDDEGGPVDRRHPLGWTALMVAAANDKPDVVRE 68
+ N +R+ E I KE QQ +D + +D GWTAL+ + + D E
Sbjct: 626 VDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRFGWTALVSSGLIEYLDAEEE 682
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 235 GSSGIGKTELAKQLARYM 252
G SG GKTE AK++ +Y+
Sbjct: 133 GESGAGKTEAAKRIMQYI 150
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 232 LFLGSSGIGKTELAKQLARYMHKD 255
L +G +G GKT + + LA +HK+
Sbjct: 1190 LLVGDTGCGKTTVCQILAECLHKE 1213
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.135 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,157,635
Number of Sequences: 5004
Number of extensions: 39266
Number of successful extensions: 137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 18
length of query: 326
length of database: 2,362,478
effective HSP length: 73
effective length of query: 253
effective length of database: 1,997,186
effective search space: 505288058
effective search space used: 505288058
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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