Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001075-TA|BGIBMGA001075-PA|IPR008934|Acid
phosphatase/vanadium-dependent haloperoxidase
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    29   1.7  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   7.0  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    26   9.2  

>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 291 LIIKRMFYLISGFGLSINGKHTYCGDYIYSGHTMVLVLSYLIVAEYSPKKLWPMH 345
           +++   FY++ G   S+        +Y+YSG     V+ + + +   PK  W  H
Sbjct: 1   MVVPTPFYVLRGHSSSVTSVLFDANEYLYSGDEAGFVICWCLTS-MRPKCAWRAH 54


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 935

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 18 INFAEPLVESVRVYLANEVPSKQLAL 43
          I F  PL+  ++ Y A E P+K+L L
Sbjct: 23 IYFVTPLIHGMKQYSAGEAPAKRLFL 48


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 158 TVREERYPKEIWKTILSFFFLFMCVCINMI--SLSLVHERLPDRNTTKPLNDI 208
           T+ E++YP  +W+ I   + L +   IN +   LS  H  L D+N  +   DI
Sbjct: 498 TLEEKKYPGIVWERI--HYVLNIYTTINSVEPELSEDHGDLDDQNLFQVFTDI 548


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.138    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,283
Number of Sequences: 5004
Number of extensions: 76814
Number of successful extensions: 236
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 3
length of query: 443
length of database: 2,362,478
effective HSP length: 75
effective length of query: 368
effective length of database: 1,987,178
effective search space: 731281504
effective search space used: 731281504
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)