Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001075-TA|BGIBMGA001075-PA|IPR008934|Acid
phosphatase/vanadium-dependent haloperoxidase
         (443 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    29   0.10 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.0  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 28.7 bits (61), Expect = 0.10
 Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 2/96 (2%)

Query: 242 KHRFIVARRLFFIIGLLYLYRSITMFVTVLPVSSMTYTCSPKSNSTAPLLIIKRMFYLIS 301
           K+   +   +F + GL  L   + + + +L VS    T     + T  L+++  + ++IS
Sbjct: 9   KYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSIT--LIVLGSIIFVIS 66

Query: 302 GFGLSINGKHTYCGDYIYSGHTMVLVLSYLIVAEYS 337
            FG     + ++C    ++   + ++L  + VA Y+
Sbjct: 67  FFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYA 102


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 333 VAEYSPKK-LWPMHWAMAGSAV 353
           VAE+ P + LWP  W +  S V
Sbjct: 571 VAEWEPPRALWPTEWKVRPSTV 592


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 355 GVSFVLLAHGHYTVDVVIAYYITTRLFWTFHSLLVTPHRTGN 396
           G SF+L   G  T +V   Y I   + W    L+    R  N
Sbjct: 228 GFSFLLYVSGFITTEVAGTYAIFLYISWHQKELVRRDSRRKN 269


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.138    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,322
Number of Sequences: 429
Number of extensions: 5724
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 443
length of database: 140,377
effective HSP length: 60
effective length of query: 383
effective length of database: 114,637
effective search space: 43905971
effective search space used: 43905971
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)