GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001073-TA|BGIBMGA001073-PA|IPR000462|CDP-alcohol
phosphatidyltransferase
         (454 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    30   0.029
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    26   0.63 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    26   0.63 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    26   0.63 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    26   0.63 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   4.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   4.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   4.4  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 30.3 bits (65), Expect = 0.029
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 238 GVGKNGSTVALPTIKISVNLISNYVVVLFTLYLV 271
           G+GK  +  +  T+K+S+N+IS   + +F LYL+
Sbjct: 180 GLGKQYNIASSKTLKLSINIISLVQLWIFQLYLL 213


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.63
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 363 PAMLFLNQYFNNALPEYWVLWLCT-VWV 389
           P ++FLN + ++     W+LWL +  W+
Sbjct: 450 PPVVFLNDFISHQHAWIWLLWLLSQTWI 477


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.63
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 363 PAMLFLNQYFNNALPEYWVLWLCT-VWV 389
           P ++FLN + ++     W+LWL +  W+
Sbjct: 450 PPVVFLNDFISHQHAWIWLLWLLSQTWI 477


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.63
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 363 PAMLFLNQYFNNALPEYWVLWLCT-VWV 389
           P ++FLN + ++     W+LWL +  W+
Sbjct: 450 PPVVFLNDFISHQHAWIWLLWLLSQTWI 477


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.63
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 363 PAMLFLNQYFNNALPEYWVLWLCT-VWV 389
           P ++FLN + ++     W+LWL +  W+
Sbjct: 450 PPVVFLNDFISHQHAWIWLLWLLSQTWI 477


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 363 PAMLFLNQYFNNALPEYWVLWLCT-VWV 389
           P ++FL  + ++     W++WL +  W+
Sbjct: 204 PPLMFLQDFLSHQHAWIWLVWLLSQAWI 231


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 363 PAMLFLNQYFNNALPEYWVLWLCT-VWV 389
           P ++FL  + ++     W++WL +  W+
Sbjct: 437 PPLMFLQDFLSHQHAWIWLVWLLSQAWI 464


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 363 PAMLFLNQYFNNALPEYWVLWLCT-VWV 389
           P ++FL  + ++     W++WL +  W+
Sbjct: 437 PPLMFLQDFLSHQHAWIWLVWLLSQAWI 464


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.138    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,591
Number of Sequences: 317
Number of extensions: 4186
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 8
length of query: 454
length of database: 114,650
effective HSP length: 59
effective length of query: 395
effective length of database: 95,947
effective search space: 37899065
effective search space used: 37899065
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)