GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001073-TA|BGIBMGA001073-PA|IPR000462|CDP-alcohol
phosphatidyltransferase
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...   146   7e-36
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    31   0.44 
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    31   0.44 
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    29   1.0  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    29   1.3  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    28   2.3  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    27   7.2  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   7.2  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   9.5  

>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score =  146 bits (353), Expect = 7e-36
 Identities = 83/200 (41%), Positives = 118/200 (59%), Gaps = 12/200 (6%)

Query: 9   LNAAQLKRLSEHKYSCTSASVLDAW-LQP-WWCWLVSKTPLWLAPNLITILGL---IVNI 63
           LN  QLK L  +KYS    S+L  + L+P WW  L+   P+ +APNLIT++GL   ++NI
Sbjct: 3   LNRKQLKNLHNYKYSAIDNSLLSKYILKPYWWNQLLKVIPMSMAPNLITLIGLGFVVINI 62

Query: 64  VTTLILVW-YSPDARQDPPRWACALCALGVFVYQSLDAIDGKQARRTGSQSPLGELFDHG 122
           +T L+  + Y  DA    P W  A  A+G+F+YQS DAIDG QARRTG+ SPLG+LFDHG
Sbjct: 63  LTMLVYKYHYEMDAF---PSWVYASWAIGLFLYQSFDAIDGSQARRTGTSSPLGQLFDHG 119

Query: 123 CDSISTVFIALGACIAVKLGEYPTWMFFQCFCAMTLFYCAHWQAYVTGTLKMGRID-VTE 181
            D+I+T F  L     ++L  + +      F ++  FY + W+ Y TGTL +       E
Sbjct: 120 VDAINTSFEVLLTIELLQLDMFSS--ILTQFASLLYFYISTWEEYHTGTLYLSYFSGPVE 177

Query: 182 AQFSIIGIHLISAVLGPDFW 201
               +IG+  ++A+ G  FW
Sbjct: 178 GIVMVIGLFALTAIKGDSFW 197



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 296 LSPVIPFSLVVVPAFIIFQKSESHVYENHPALYILAFGMVTAKVTNKLVVAHMTKSEMEY 355
           LS ++P+ L  +  F ++ K  +  +E+H          + A     ++V+H+T+S   Y
Sbjct: 257 LSGILPYFLQWMAVFSLYAKYPAF-FEHHFLTIFCLNAFIFAYSVGVVIVSHITESPFPY 315

Query: 356 YDWSLLGPAMLFLNQYFNNALPEYWV-LWLCTVWVC-GELVRYCGQVCREICDHLDIQLF 413
           ++  +L   +  ++ Y    L       + C V +C G    +   V   I +   I+  
Sbjct: 316 WNVLILPFLVDAVDAYTFGVLKNVQTEYFFCYVGICIGVYGNFVAHVIAMITEEYGIKCL 375

Query: 414 RI 415
            I
Sbjct: 376 TI 377


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 15  KRLSEHKYSCT-SASVLDAWLQPWWCWLVSKTPLWLAPNLITILGLIVNIVTTLILVWYS 73
           +RL ++  S +  AS+L   LQ W  ++  K P W A   +  L  ++ I+ +L   W  
Sbjct: 108 ERLEQYMESSSLDASILPKNLQQWRVYIEHKAPCW-AILAVVDLATVLEILESL-SSWLE 165

Query: 74  PDARQDPPRWACALC 88
            DA     +W    C
Sbjct: 166 KDAIDLQSQWIFCFC 180


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 15  KRLSEHKYSCT-SASVLDAWLQPWWCWLVSKTPLWLAPNLITILGLIVNIVTTLILVWYS 73
           +RL ++  S +  AS+L   LQ W  ++  K P W A   +  L  ++ I+ +L   W  
Sbjct: 108 ERLEQYMESSSLDASILPKNLQQWRVYIEHKAPCW-AILAVVDLATVLEILESL-SSWLE 165

Query: 74  PDARQDPPRWACALC 88
            DA     +W    C
Sbjct: 166 KDAIDLQSQWIFCFC 180


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 83  WACALCALGVFVYQSL-DAIDGKQARRTGSQSPLGELFDHGCDSISTVFIALGACIAVKL 141
           W    C + V++Y SL DA DG  AR+    +  G + D   D  +T  +    C A   
Sbjct: 50  WHPNYCTI-VYLYSSLLDAFDGWAARKLHQATNFGAILDMVTDRCATSCLLCFLCAA--- 105

Query: 142 GEYPTW-MFFQCFCAMTLFYCAHWQAYVTGTLKMG 175
             YP + + FQ   ++ L   +H+  ++  TL  G
Sbjct: 106 --YPKYAIIFQLLVSLDL--ASHYM-HMYSTLHQG 135


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 209 LEIRYSVALAAIVGAFLTIGTLAAAIVSGGVGK--NGSTVALPTIKISVNLISNYV 262
           LE+  S  L   VG F T+GTL+ A+ +    +   G + A+ T+  +++ +S YV
Sbjct: 623 LEVTVSTTLR--VGLFRTLGTLSGAVYAYAAWEVSQGWSYAIATLTFAISWVSCYV 676


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 12  AQLKRLSEHKYSCTSASVLDAWLQPWWCWLVSKTPLW 48
           A+L+R  E  Y+C   +V+ +    W  +++ +TP+W
Sbjct: 141 AKLRRFEEQAYTCLYFTVMGS----WGLYVMKQTPMW 173


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 322 ENHPALYILAFGMVTAKVTNKLVVAHMTKSEMEYYDWSLLGPAMLFLNQYFNNALPEYWV 381
           EN+P L +    +VT+ +     V       M+ +++ LL PA  F+NQ     + E   
Sbjct: 220 ENYPNLVLPGPLLVTSMLEYFRSVYPQMSKNMKRFEFRLLSPA--FVNQPLRICISETGN 277

Query: 382 LWL 384
           LW+
Sbjct: 278 LWI 280


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 127 STVFIALGACIAVKLGEYPTWMFFQCFCAMTLFYCAH 163
           S +F  L   + V L  YP +  F+    ++LFYCA+
Sbjct: 48  SIIFSFLYLLLIVPLFLYPEYWAFKLVELLSLFYCAY 84


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 289 TVAGTSILSPVIPFSLVVVPAFIIFQKSESHVYENHPALYILAFGMV 335
           T+  +S +S ++  ++VV+P   I  +  S + + HP L++LA GM+
Sbjct: 763 TLVVSSFISHIVA-AMVVLP---IVHEVGSRLADPHPRLFVLASGMM 805


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.138    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,106
Number of Sequences: 5004
Number of extensions: 69973
Number of successful extensions: 224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 10
length of query: 454
length of database: 2,362,478
effective HSP length: 75
effective length of query: 379
effective length of database: 1,987,178
effective search space: 753140462
effective search space used: 753140462
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)