Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001073-TA|BGIBMGA001073-PA|IPR000462|CDP-alcohol
phosphatidyltransferase
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0723 - 5287864-5287885,5287971-5288043,5288521-5288626,528... 105 6e-23
02_01_0145 + 1040798-1040934,1041152-1041194,1041999-1042076,104... 36 0.067
03_01_0020 + 180963-181346,181432-181994,183000-183822 35 0.12
05_07_0288 + 29001228-29001399,29001493-29001723,29001817-290019... 33 0.62
12_02_1279 + 27510605-27513301 32 1.1
10_08_0878 - 21239104-21239968,21242008-21242927 31 1.9
09_02_0157 + 5083771-5083996,5084007-5084326,5085958-5086392,508... 30 4.4
09_03_0051 + 11902322-11903125 29 5.8
07_03_1046 - 23531218-23532638,23532781-23532868 29 5.8
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 29 7.7
05_01_0323 - 2545281-2545784 29 7.7
04_04_0051 - 22371490-22371658,22372333-22372778,22373880-223740... 29 7.7
02_01_0455 + 3266123-3266258,3266348-3266670,3267083-3267661,326... 29 7.7
>06_01_0723 -
5287864-5287885,5287971-5288043,5288521-5288626,
5288829-5288891,5290165-5290249,5290337-5290377,
5291260-5291323,5291647-5291716,5291886-5291960,
5292070-5292164,5293671-5293771,5293852-5293874,
5293956-5294031,5294229-5294322,5294493-5294548,
5296204-5296327,5296607-5296743
Length = 434
Score = 105 bits (253), Expect = 6e-23
Identities = 67/196 (34%), Positives = 98/196 (50%), Gaps = 4/196 (2%)
Query: 53 LITILGLIVNIVTTLILVWYSPDARQDPPRWACALCALGVFVYQSLDAIDGKQARRTGSQ 112
+ ++ ++ V LI YSP PPRW L +F+YQ+ DA+DGKQARRT S
Sbjct: 94 MFLVVSALLGYVRILISQIYSPHLDTAPPRWVHLAHGLLLFLYQTFDAVDGKQARRTSSS 153
Query: 113 SPLGELFDHGCDSISTVFIALGACIAVKLGEYPTWMFFQCFCAMTLFYCAHWQAYVTGTL 172
SPLGELFDHGCD+++ F AL + G + T+ F+ A FY A W+ + T TL
Sbjct: 154 SPLGELFDHGCDALACAFEALALGSTLMCGRF-TFCFW--VIAAVPFYLATWEHFFTNTL 210
Query: 173 KMGRID-VTEAQFSIIGIHLISAVLGPDFWSTQVGGGLEIRYSVALAAIVGAFLTIGTLA 231
+ I+ TE I H + + G ++W+ + + V L I L I +
Sbjct: 211 ILPLINGPTEGLMLIYLSHSFTFLTGAEWWAQDFRKSIPLLSWVPLPFIPDIPLYIIVMI 270
Query: 232 AAIVSGGVGKNGSTVA 247
I+ + GS V+
Sbjct: 271 LMILFAVIPTIGSNVS 286
>02_01_0145 +
1040798-1040934,1041152-1041194,1041999-1042076,
1042444-1042544,1042900-1042994,1043161-1043229,
1043432-1043501,1043757-1043820,1043907-1043947,
1044098-1044182,1044608-1044682
Length = 285
Score = 35.9 bits (79), Expect = 0.067
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 17 LSEHKYSCTSASVLDAW-LQPWWCWLVSKTPLWLAPNLITILGLIVNIVTTLILVWYSPD 75
L +KYS S++ + LQP+W V+ PLW + I+ + +YSP
Sbjct: 12 LRRYKYSGVDHSLVAKYILQPFWSRFVNLFPLWFPDSSIS------SFFFDSFNWFYSPH 65
Query: 76 ARQDPPRWACALCALGVFVYQ 96
PPRW + +F+YQ
Sbjct: 66 LDTAPPRWVHLAHGMLLFLYQ 86
Score = 34.7 bits (76), Expect = 0.15
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 149 FFQCFCAMTLFYCAHWQAYVTGTLKMGRID-VTEAQFSIIGIHLISAVLGPDFWSTQVGG 207
F+ F A FYCA W+ + T TL + ++ TE I H + G ++W+
Sbjct: 103 FWYWFIAAVPFYCATWEHFFTNTLILPIVNGPTEGLMLIYLCHFFTFFTGAEWWAQDFRK 162
Query: 208 GLEIRYSVALAAIVGAF-LTIGTLAAAIVSGGVGKN 242
+ + V L V + + + + A V +G N
Sbjct: 163 SIPLLNWVPLVPEVPVYGIALFLMIAFAVIPTIGSN 198
Score = 30.3 bits (65), Expect = 3.3
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 296 LSPVIPFSLVVVPAFIIFQKSESHVYENHPALYILAFGMVTAKVTNKLVVAHM 348
L+ + PF L++ + S S + N P L ++ G + ++++AH+
Sbjct: 217 LAMLFPFGLLLAGVLVWSYLSPSDIMRNQPHLLVIGTGFAFGFLVGRMILAHL 269
>03_01_0020 + 180963-181346,181432-181994,183000-183822
Length = 589
Score = 35.1 bits (77), Expect = 0.12
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
Query: 157 TLFYCAHWQAYVTGTLKMGRIDVTEAQFSIIGIHLISAVLGPDFWSTQVGGGLEIRYSVA 216
TL + Y+TGT+ +G A + +G + +LG T +G L I A
Sbjct: 65 TLGVAVNLVTYLTGTMHLGSAASANAVTNFLGTSFMLCLLGGFLADTYLGRYLTIAIFTA 124
Query: 217 LAAIVGAFLTIGTLAAAIVSGGVGKNGSTVALPT-IKISVNLISNYVVVLFT 267
+ A A LTI T A + GS A ++ V + Y+ L T
Sbjct: 125 VQAAGMAVLTISTAAPGLRPPPCSSGGSGCAAANGTQLGVLYLGLYMTALGT 176
>05_07_0288 +
29001228-29001399,29001493-29001723,29001817-29001914,
29002687-29002873,29003068-29003198,29003282-29003908
Length = 481
Score = 32.7 bits (71), Expect = 0.62
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 223 AFLTIGTLAAAIVSGGVGKNGSTVALPTI-KISVNLISNYVVVLFTLYLVA 272
AFL+I LA+ +G + + +T+A P K+ L+ Y VVLFT YL A
Sbjct: 253 AFLSISILASVFGNGILPEIQATLAPPAAGKMMKALVLCYTVVLFTFYLPA 303
>12_02_1279 + 27510605-27513301
Length = 898
Score = 31.9 bits (69), Expect = 1.1
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 43 SKTPLWLAPNLITILGLIVNIVTTLILVWYSPDARQDPPRWACALCALGVFVYQSLDAID 102
S+TP+W A TIL IV +T L PD D W+ V + LD
Sbjct: 91 SRTPVWTATAGTTILQSIVLSLTAQGLALSDPDPAAD-YAWSTPRLRAPVAALRLLDT-- 147
Query: 103 GKQARRTGSQSPLGELFDHGCDSI 126
G+ A + + L FDH D++
Sbjct: 148 GELALLDAANATLWSSFDHPTDTL 171
>10_08_0878 - 21239104-21239968,21242008-21242927
Length = 594
Score = 31.1 bits (67), Expect = 1.9
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Query: 157 TLFYCAHWQAYVTGTLKMGRIDVTEAQFSIIGIHLISAVLGPDFWSTQVGGGLEIRYSVA 216
TL + Y+TGT+ +G + IG + +LG T +G L I A
Sbjct: 49 TLGIAVNLVPYMTGTMHLGNAAAANTVTNFIGTSFMLCLLGGFVADTYLGRYLTIAIFEA 108
Query: 217 LAAIVGAFLTIGTLAAAI----VSGGVGKNGSTVALPTIKISVNLISNYVVVLFT 267
+ A LTI T A + G + VA ++ V + Y+ L T
Sbjct: 109 VQATGVMILTISTAAPGLRPPACGDPKGASAECVAADGTQLGVLYLGLYLTALGT 163
>09_02_0157 +
5083771-5083996,5084007-5084326,5085958-5086392,
5087277-5087921
Length = 541
Score = 29.9 bits (64), Expect = 4.4
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 187 IGIHLISAVLGPDFWSTQVGGGLEIRYSVALAAIVGAFLTIGTL 230
+GI ++A L +F++ ++ G R S+A+AA+ G LT+G L
Sbjct: 208 VGIGAVTARL-TNFFTQKIRQGWGWRVSLAVAAVPGGLLTLGAL 250
>09_03_0051 + 11902322-11903125
Length = 267
Score = 29.5 bits (63), Expect = 5.8
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 36 PWWCWLVSKTPLWLAPNLITILGLIVNIVTTLILVWYSPDARQDPPR 82
PWW W P WL P +++N+V + V S PR
Sbjct: 4 PWWWWW--PLPAWLMPGSTAAWFVVLNVVVCAVAVLSSRARESLSPR 48
>07_03_1046 - 23531218-23532638,23532781-23532868
Length = 502
Score = 29.5 bits (63), Expect = 5.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 60 IVNIVTTLILVWYSPDARQDPPRWACALCALGVFVY 95
+V + T L +V SPDA+ P WA LC + Y
Sbjct: 352 LVGLATGLTVVGGSPDAQV--PSWAVGLCVASILAY 385
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 29.1 bits (62), Expect = 7.7
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 150 FQCFCAMTLFYCAHWQAYVTGTLKMGRIDVTEAQFSIIGIHLISAVLGPDF--WSTQVGG 207
F+ T W + G K GR+D + F +G S+ PD W+T + G
Sbjct: 175 FEASLGATASNVVSWNTMIDGYCKAGRMDAAQELFDCMGCSFSSSP-SPDVVTWNTMMAG 233
Query: 208 GL 209
L
Sbjct: 234 YL 235
>05_01_0323 - 2545281-2545784
Length = 167
Score = 29.1 bits (62), Expect = 7.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 36 PWWCWLVSKTPLWLA 50
PWWCW K P+ A
Sbjct: 111 PWWCWAAEKAPVTAA 125
>04_04_0051 -
22371490-22371658,22372333-22372778,22373880-22374054,
22374134-22374240,22374358-22374646,22374942-22375075,
22375228-22375423,22375611-22375719,22375839-22375965
Length = 583
Score = 29.1 bits (62), Expect = 7.7
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 156 MTLFYCAHWQAYVTGTLKMGRIDVTEAQFSIIG-IHLISAVLGPDFWST--------QVG 206
+ L +CA A+ G +K + A ++G + +I + W T ++
Sbjct: 28 VVLSFCA---AFFLGGIKAAVVGPVAAALMVLGNVGVILLLFPAHVWWTIYSLIKTERIN 84
Query: 207 GGLEIRYSVALAAIVGAFLTIGTLAAAIVSGGVG 240
GL++ +AL + G +L +G +A+V+ G G
Sbjct: 85 AGLKLAVLIALPVLFGLWLGLGIFGSALVALGYG 118
>02_01_0455 +
3266123-3266258,3266348-3266670,3267083-3267661,
3267866-3268336
Length = 502
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 186 IIGIHLISAVLGPDFWSTQVGGGLEIRYSVALAAIVGAFLTIGTLA 231
+I + ++SA L +W++++ GG R +A + A + +G+LA
Sbjct: 178 MITVGILSASL-TTYWTSKIAGGWGWRVGLAFGTVPAAVIALGSLA 222
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.327 0.138 0.451
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,408,179
Number of Sequences: 37544
Number of extensions: 481785
Number of successful extensions: 1400
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1389
Number of HSP's gapped (non-prelim): 17
length of query: 454
length of database: 14,793,348
effective HSP length: 84
effective length of query: 370
effective length of database: 11,639,652
effective search space: 4306671240
effective search space used: 4306671240
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 62 (29.1 bits)
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